Protein Info for GFF1092 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 524 PF13007: LZ_Tnp_IS66" amino acids 57 to 130 (74 residues), 44.9 bits, see alignment E=3.2e-15 PF13005: zf-IS66" amino acids 137 to 179 (43 residues), 54.1 bits, see alignment 3.3e-18 PF03050: DDE_Tnp_IS66" amino acids 193 to 474 (282 residues), 353.7 bits, see alignment E=1.8e-109 PF13817: DDE_Tnp_IS66_C" amino acids 481 to 518 (38 residues), 54.6 bits, see alignment 2.1e-18

Best Hits

KEGG orthology group: None (inferred from 79% identity to dia:Dtpsy_1022)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (524 amino acids)

>GFF1092 Mobile element protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MLAASSSPVITADHLDTLEPQQMRAALLSLMGELAERDGVIARQGQEAVFKQAQIDKLTH
ENALLKRMKFAAQSERFSAEQKSLLDESLDEDLQAVADEIEQATPPVAGRQDKQVPKRAP
LPANLSRREIRHEPESTTCACGCQMKRIGEDVAEKLDYAPGVFTVERHIRGKWACAQCET
IHQVPVDPHIIDKGIPTTGLLAQVLVAKYADHLPLYRQEAIFGRAGLAIPRSTLAQWVGS
CGVQLQPLVDAMRTELLQRRVLHADETPVSMLKPGNGKAHRAYLWAYATGAFENIKAVVY
DFCESRSGEHARRFLGDWRGSLTCDDFSGYKALIASGVTEVGCLAHARRKFFDLHAANQS
QIAEVALQQFARVYEIEREVKEIATDQRQTIRQQQTKPLLDALHQWMVLQRQKVPEGSAS
AKALDYSLRRWEALTRFVDDGQLPVDNNWIENQIRPIAIGRNNWLFAGSLRAGQRAAAVM
TLIQSARLNGHDPYAYLKDVLARLPTQRVSLVHELLPHRWFAPS