Protein Info for PS417_05395 in Pseudomonas simiae WCS417

Annotation: glycosyl transferase family 51

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1033 transmembrane" amino acids 33 to 55 (23 residues), see Phobius details PF00912: Transgly" amino acids 159 to 356 (198 residues), 64.6 bits, see alignment E=7.9e-22

Best Hits

KEGG orthology group: None (inferred from 82% identity to pfs:PFLU1101)

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UDI1 at UniProt or InterPro

Protein Sequence (1033 amino acids)

>PS417_05395 glycosyl transferase family 51 (Pseudomonas simiae WCS417)
MGALWQTDSKQAALPPDSPDQPPLPHSARTRTAWWRLVWLVLLLALCALGWAASVEMRTS
RLQARYLSPLAASLSYRLEPGASDAIVYPGDGPFDRRLGYSALNEFLPRLLKRNYLIQAQ
TRFSPALMDYAERGLFVPYAEKVQAGLSITDCRAAPLYTFTYPQQLYTRFAAIPPLVVQS
LLFIEDRDLLDPTQPLANPSVDWPRFAKAAWSQVAKLVQLPGQTAGGSTLATQLEKYRHS
PDGLTVSGGEKIRQMLSASVRAYQAGPDTLVSRQNIVRDYLNSVPLSAVPGHGEVHGLAE
GLRVWYGADFNQVNQALSDSAQDPASLARRGLALRQVLSLMIAQRRPSHYLTKGREELAQ
LTDSHLRLLAQNQVIPATLSAAALASSVTYRDWQQQPTVQPVETNKAINVARSRLASLLD
RSLYDLDRLDLSATSTLHYALQTQATDYLKHLADPTFAAQMGLLGPRLLTPQSTPQVRYS
FTLYELTPDGARVRVQTDNTDQPFDINEGSKLELGSTAKLRVLTTYLQIITELHERYQAR
TPAELKNVELPEQDVLSRWALNYLTQHSDRDLAKMLDAALDRTYSANPGEAFFTGGGLHR
FHNFRNEDNGRNPTLRDALRESINLPFIRLMRDLVRYTTYSGENNSARLLKDDNDPRRQE
YLAKFADHEGTAFLLKFWKKYRHKDTQARLDTFMDSLHPTAIRLAAVHRYLLPQASQESF
NGFVRSHLKNLKTTDKLTDERLERLYQSYGPGAYDLPDQGYIAKVHPLDLWLLGYLLNHP
EATFDEIVKASEFERQEVYSWLFKSRHQSARDSRIRTMLEIEAFLDIHQRWQAVGYPFDH
LVPSLATAIGSSGDRPAALAELMGIILNDGVRLPVLRIDSLQFARGTPYETHVANDPNRG
KRVLRSEVATALRGALSQVVDAGTAKRVAGSFKLADGTALAMGGKTGTGDNRIEAMGAGG
RMLSSKSINRTATFVFYIGAHHFGTLTAFVPGASAQHFTFTSALPVQVLKGMAPLLNPLL
QPGDPALCLAGKH