Protein Info for PS417_05390 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1698 transmembrane" amino acids 257 to 278 (22 residues), see Phobius details amino acids 437 to 461 (25 residues), see Phobius details PF20178: ToxA_N" amino acids 70 to 328 (259 residues), 142.2 bits, see alignment E=6.2e-45 PF13855: LRR_8" amino acids 1159 to 1215 (57 residues), 29 bits, see alignment (E = 1.9e-10) PF12799: LRR_4" amino acids 1181 to 1214 (34 residues), 27.1 bits, see alignment (E = 9.4e-10) PF14496: NEL" amino acids 1347 to 1592 (246 residues), 131.5 bits, see alignment E=7.6e-42

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U082 at UniProt or InterPro

Protein Sequence (1698 amino acids)

>PS417_05390 hypothetical protein (Pseudomonas simiae WCS417)
MPELPQPNSAFHGAHYTHIRDALPDWLTQATPGRLGALKAAGVKHLTAPAPLKAAIAEHW
QQQNRLDQRLAGLNDVYAFAEPLLKHALRDYGNLDVRNTYLRLYVDAKTSGWKLNVTGAQ
VSKTFSLLDAALYNFAADQTFLDFAFLGPTDARGQRDVLSITHRRSGTRLTAQQFKDICR
QLDIGAQYQLKLSQALGFKNPALARTLHGEVTALHKAALKSAAHLALAKADLKPDAHAAM
LNLVDDQPTPRLDGAALQAYTLSVMNIALVGIVLFIAAPSPRVIAYVAEDPAHPLKEYPS
PQAFMQELTRQLRDKARYQVFFSQFVPHAKRAAFFAGINARLSHIQWHQKQPTDSGPSWQ
DTPISDPNLHFSLHAWQDDYRQRPPSPAADTLWDYLFRTQLNKIVNDARNIALSTVDVDR
RARWAWWDNLEQMLADILNAALLVVTPFVPVLGELMLVYSAYQVMDEVFEGIVDWSEGLR
TEAWEHVVGVADSVIQFALFAAGASIGQLARLKLSPFVEGLVPVQRADGSRRLWNPDISA
FAQQDLIPEGSTPAPSGLHTHQGKTLLALDGHHLEVHYDPLSDVHRVVHPERADAYRPRL
QLNGDGAVTHEGERPRTWERPRLLRRLGHRVQPFSDTQLEQLRVASATEDGALRRVYEHN
EALPPLLDAGLKRLEAAESIQVASDRIRAGQALSADPSSDWFEQMVTELDGWPQDKALQV
FLKPDLSGSSHRYGAAQAGPADTLRISLGDVLSGHLPERVLGFLDEAAITLLLGAEVPES
QRVQALRDLLANYVLSQSRDIAPAVYRAREQSDAPGIIGLRRDHPDLDLSLARRLLERAR
PHEREALANDRHAPLRLRNQASELQLAADSVHAYEGFYPPAMPNPATEHLLLKSLLFNTD
ALTDLHLEIREATVTGSLRSQAGSDTAATRRVLVHTRLGYSVYDNAGQPLHRPASLYEAV
LLALPSEPRTALGYQPGEGEDFKHWLMTHLEPLAERRKVLAGPDTHRVMERETAQLLGGP
LLSRCRPAPAENHTAFARDVLQRLFPSLSEQRLNRFIEDIPADQLSSTLNELTLQKHTLN
TQLHTWKQSPTHHPKGSAQERQQLAARRRLALLLEQCWGERYAEYTDDWGRTQSGARVDL
DGMPLPESLPALTVNFEHVTFLNLSQSSVGQSHCGLLKHFPALRSLDLSHNHLTSLPVEL
TALRQLRNLNLSNNRMVLFPEDVTRLRNLRRLHIAILDHNPLTAAPDITRMPNLRRLDLN
HTQIHQWPIGLFAHARNELFDLNLSGNPITTLPALTAEPTAARTVARTRLDRHTLNDDQR
ALYERYRTEAGLDPYRTYEPQGNSDPWLVDADAGTRVVREHLWDAVEDEHGSQGFFEVIK
YLEPPEFFENPQDRQRHAANQAGLTQRVWRLINAAHADSALRERLFKLSSFPGLCGDGGA
QIFNEMGIEVMASEARRFSTTLPELEGRLVTLAKGAARLKQLNQVAQEEVARRLRPKAAG
GEGQRLRSEVLNGEAGEVDEVDIHLAYQTSLANELDLPWLSDHMLYRDTADVSASRIQQA
RISVMELGRGDGLVNQMLLEPYWETFLQETYDSLYQQNLTEYTEKFYRLDDLQTLQAQWH
AEQEPQQKARLREQLKALADELQTQESVVFADTPISDALYNRLLNDLGYNEKEWMRGLTR
EALKKAHLRRNREPLPTQ