Protein Info for GFF105 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 26 to 45 (20 residues), see Phobius details PF04612: T2SSM" amino acids 13 to 184 (172 residues), 49.8 bits, see alignment E=2.3e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>GFF105 hypothetical protein (Variovorax sp. SCN45)
MKPGPTMQWLREGRARWQALPPRDRLAASAAAIVLVLAVLWLFAAKPALETMARWQRDLP
RLQAQSRELDEVLSGMPAARATQGATASEPPQAGLDRAGLQGAYRIELIVADAPPGAGKA
PPAKAWRIAFEQPAPAAKVFPWLLAVSARADLEVTGVVLDRKDGTDGNDPQASVRGVVDL
QSTQLYKDGP