Protein Info for GFF1043 in Xanthobacter sp. DMC5

Annotation: FeS cluster assembly protein SufD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 PF19295: SufBD_N" amino acids 33 to 176 (144 residues), 45.2 bits, see alignment E=8.5e-16 TIGR01981: FeS assembly protein SufD" amino acids 157 to 428 (272 residues), 252.7 bits, see alignment E=2.1e-79 PF01458: SUFBD_core" amino acids 185 to 412 (228 residues), 252.1 bits, see alignment E=5e-79

Best Hits

KEGG orthology group: K09015, Fe-S cluster assembly protein SufD (inferred from 72% identity to xau:Xaut_4467)

Predicted SEED Role

"Iron-sulfur cluster assembly protein SufD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>GFF1043 FeS cluster assembly protein SufD (Xanthobacter sp. DMC5)
MTINVRPARTAAEEAIAAALEASITAEAGQGRIPEVRRAARDAFLSHGLPSRRVEEWKYT
DLRAAVRDFPNPAPAPGAVEEAEAAPLVPSLPNAGRILFVNGALSRAGSDFAALSEGVTA
LPLDAAIAAGDPLADRINALSPSRYDGPLALNTGFLGEGVAIRVDAGVKAARPVHIAHAF
PGAEAVAGFTRTVVVVGAGAEVTLVETFAGRDGVAYQSNHAVELVVGDCAIVNLVRIQEE
GDAAFHFGTLMLELGREAKLNLFALAQGAALARYNVYGRFEGTGAHAGIRGATLARGRQH
SDTTLVVDHAVAGGESRELFKTVLADESHGVFQGKIVVRRAAQKTDGRMMSQSLLLSDRA
EMDNKPELEIFADDVQCGHGATAGALDRSMLFYLRSRGLPEKEAEMLLIQAFLGEAVEYV
EDADLRDLLIERISGWLEKRAV