Protein Info for PS417_05230 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 transmembrane" amino acids 13 to 39 (27 residues), see Phobius details amino acids 51 to 69 (19 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details PF07947: YhhN" amino acids 27 to 204 (178 residues), 155 bits, see alignment E=9.3e-50

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfs:PFLU1068)

Predicted SEED Role

"POSSIBLE MEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U052 at UniProt or InterPro

Protein Sequence (218 amino acids)

>PS417_05230 membrane protein (Pseudomonas simiae WCS417)
MPWLILALMGAGTFIYGLTTHATLLCLLVKPLPVLALLGWLHDAPPTDYRRWISLGLIFS
LVGDVLLAWPGDLFIFGLGAFLLAHLAYLKAYFSDCRRLALLPLILALAVGAILLSILIS
HGLGDLLIPVVVYALVISAMLWRALARLGSDVPKRSAGLAAAGAASFVFSDTLIGINRFV
VAFDAAPYLLITTYWLGQWGITASAFHQTTRAHEGQVG