Protein Info for GFF1023 in Variovorax sp. SCN45

Annotation: UPF0311 protein RPA1785

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 PF11578: DUF3237" amino acids 12 to 158 (147 residues), 151.5 bits, see alignment E=7.5e-49

Best Hits

Swiss-Prot: 42% identical to Y1785_RHOPA: UPF0311 protein RPA1785 (RPA1785) from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)

KEGG orthology group: None (inferred from 79% identity to vpe:Varpa_3675)

Predicted SEED Role

"UPF0311 protein RPA1785"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (160 amino acids)

>GFF1023 UPF0311 protein RPA1785 (Variovorax sp. SCN45)
MSVFDFNAITAPSLEHFADLRVEVGTPQVLGGTPRGMRRVVPITGGEATGHGWRARVLPG
GCDFQLIVSETLSELDARYALETDAGDLIYVQNQAVRSATPEVMAQLLRGEPVDPTQVYF
RCNPRFETTSPSLKWISERMFTGAGMRKPAEVVMRFYTLV