Protein Info for GFF1020 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 transmembrane" amino acids 27 to 45 (19 residues), see Phobius details amino acids 89 to 115 (27 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details amino acids 170 to 195 (26 residues), see Phobius details amino acids 221 to 240 (20 residues), see Phobius details amino acids 252 to 275 (24 residues), see Phobius details amino acids 298 to 318 (21 residues), see Phobius details amino acids 373 to 390 (18 residues), see Phobius details amino acids 398 to 422 (25 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 88 to 151 (64 residues), 49.2 bits, see alignment E=3e-17 PF00528: BPD_transp_1" amino acids 233 to 426 (194 residues), 45.2 bits, see alignment E=4.6e-16

Best Hits

KEGG orthology group: K09970, general L-amino acid transport system permease protein (inferred from 86% identity to xau:Xaut_4547)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>GFF1020 hypothetical protein (Xanthobacter sp. DMC5)
MSEVSPAAPPRPRGRRWSWTDPKLRSQVIQITVAVILVWLLWSFYSNAQSNLTRLGIASG
FGFLDNRAGFAISQSLVPYNESMSYGRAFLVGLLNTLLVAFLGVILATLIGFLMGVARLS
KNVVIKALASAYVEITRNLPPLFQIMFWYLAVLATLPGPRQSWGFGLQPLLGAIGSGLSS
IGLGFLGGPLSAYAASLAAPGVFVNNRGLVVPRPIFEDGSMAILYALIAAFILSFLLARW
AKKRREATGHFFPVFWTSLGLIIVLPLLASAAMGFPVGVEKPELRGFNFVGGLRVIPEFV
SLLLALSIYTGGFIAEIVRSGILAVSKGQTEAAHSLGLRNGPTLRLVIIPQAMRVIVPPL
TSQYLNLTKNSSLGVAVGYPDLFAVFAGTTLNQTGQAIEIIAIIMAVYLTISIVTSAIMG
WYNKRVALVER