Protein Info for PS417_05115 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 108 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 37 to 56 (20 residues), see Phobius details amino acids 64 to 82 (19 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details PF11804: DUF3325" amino acids 2 to 100 (99 residues), 113.4 bits, see alignment E=2.5e-37

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfs:PFLU1045)

Predicted SEED Role

"FIG016502: iron uptake protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UGH2 at UniProt or InterPro

Protein Sequence (108 amino acids)

>PS417_05115 hypothetical protein (Pseudomonas simiae WCS417)
MLLALLMCYAGFTALCLSTDRHHGELLHRKPSPRRRLGLRVIGWMLLVVSIWPAVDVAGW
GQGLVEWCAVLMLSALLLVLLLPYRPRLALILAGVGLLASPVAAFATL