Protein Info for GFF1006 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 25 to 60 (36 residues), see Phobius details amino acids 92 to 109 (18 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 156 to 175 (20 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 255 to 279 (25 residues), see Phobius details amino acids 285 to 309 (25 residues), see Phobius details amino acids 319 to 338 (20 residues), see Phobius details amino acids 345 to 363 (19 residues), see Phobius details amino acids 400 to 420 (21 residues), see Phobius details amino acids 426 to 448 (23 residues), see Phobius details PF13347: MFS_2" amino acids 20 to 448 (429 residues), 145.6 bits, see alignment E=1.7e-46 PF07690: MFS_1" amino acids 30 to 395 (366 residues), 38.8 bits, see alignment E=5.5e-14

Best Hits

Predicted SEED Role

"Rhamnogalacturonide transporter RhiT" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>GFF1006 hypothetical protein (Sphingobium sp. HT1-2)
LPETAPSTARPVRLQNYLAYGSNDVLGAGSMAVISGWVLIFYTQFCGLSAGQAATIFAVA
RILDAFASPMIGYISDHFGGTWLGRKFGRRRFFILAAIPLLPSFALMWLPGQGFWYYLVS
YVLFELVYAMEIIPFETLAAEMSTDYRTKAKFAGSRILFGQASAILAGFLPLWLINALGR
DSADTFFYMGIIFAALFMVTAGLLYLFSWERHLPGSAEAIGQHPVGAGGPGQALKALYRN
LFSTMRIRAFRLHLGMYLGGYISQDIFNAAFTFFVIFALAGSTAIASGLLGTMYIVQFVA
VIIAINLALRASPAKAYQVAAADFAVGCLTLIGLWFAGVPATSPWIWLPIILCGLGRGAL
NYIPWATYNYMADVDEIVTGQRREGSFAGVMTFVRKATQAAAVAGVGFIMQAGGFVSGAA
EQSHGAILTMALLLGVGTVGCLGLGIWVSTKFRLSPATHDILMREIEHLRSGARTPTSPV
AAEVVEDLSGWRYDQLWGRNPVAQ