Protein Info for GFF1001 in Xanthobacter sp. DMC5

Annotation: Cytochrome c2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00034: Cytochrom_C" amino acids 24 to 123 (100 residues), 36.3 bits, see alignment E=5.9e-13

Best Hits

Swiss-Prot: 48% identical to CYC2_BLAVI: Cytochrome c2 (cycA) from Blastochloris viridis

KEGG orthology group: K08738, cytochrome c (inferred from 86% identity to xau:Xaut_1792)

MetaCyc: 44% identical to cytochrome c2 (Agrobacterium fabrum)

Predicted SEED Role

"Cytochrome c2" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (130 amino acids)

>GFF1001 Cytochrome c2 (Xanthobacter sp. DMC5)
MRLVLASVLVLAAATGSAYADPDVAKGETVFKKCMACHAIGPDAKVKVGPPLNGIVGAKW
AHFEGYAYSQDIKDGAAAGKVWDEATLNDYIENPKHLVPKGKMAFAGVKNEDERKDLIAF
LAQFKPDGSK