Protein Info for GFF10 in Xanthobacter sp. DMC5

Annotation: Putrescine importer PuuP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details amino acids 85 to 108 (24 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details amino acids 194 to 217 (24 residues), see Phobius details amino acids 229 to 250 (22 residues), see Phobius details amino acids 287 to 311 (25 residues), see Phobius details amino acids 332 to 351 (20 residues), see Phobius details amino acids 362 to 382 (21 residues), see Phobius details amino acids 390 to 408 (19 residues), see Phobius details amino acids 421 to 439 (19 residues), see Phobius details PF13520: AA_permease_2" amino acids 8 to 430 (423 residues), 86.6 bits, see alignment E=1.8e-28 PF00324: AA_permease" amino acids 32 to 347 (316 residues), 71.5 bits, see alignment E=5.9e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (448 amino acids)

>GFF10 Putrescine importer PuuP (Xanthobacter sp. DMC5)
MVKLKRNLGPVEAVGLSVSVMAPTMSMALNVTLAVGAAGVAAPLGFAVGTLLVAIVGFSF
VFFARKTTRAGSAYSYIGQTFGPRAGFIAGWCMLLLYIAGGSGSAALVGDFLRAAFADHG
IHIGGWWLALGVAALLAGTLFAYRDMAVAARLMLLLELGSICVIVYLGVKILTAVSATGG
LTAAPFRPDPSMGWWGVGYAVVFAVLSFAGFEAAATLAEETGQPGRAIPVALLGSVVLAG
LFFVFASYIQVVGFGVDNMKALAADEAPLNTLALKYGTVRMATALDIAAAVSAVSAVLGT
LSAAGRMLFVLGRAGLSETAARVHPVHGTPSVSVLVVGLLMLAGLLAWAPFIGPADYYDN
VGTIGVLALIVAYLGVTLAAVTHAVKAKSMVWLALGLLGTLAMLWPLYNSVYPVPAFPGN
LWPYVVAGWIALGAALATLRPGVRDAEP