Protein Info for GEMAOFIL_04698 in Pseudomonas lactucae CFBP13502

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 133 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 41 to 47 (7 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details amino acids 107 to 124 (18 residues), see Phobius details PF04304: DUF454" amino acids 14 to 127 (114 residues), 117.1 bits, see alignment E=2.2e-38

Best Hits

KEGG orthology group: K09790, hypothetical protein (inferred from 90% identity to pfs:PFLU4970)

Predicted SEED Role

"Hypothetical protein DUF454" in subsystem Heme, hemin uptake and utilization systems in GramPositives

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (133 amino acids)

>GEMAOFIL_04698 hypothetical protein (Pseudomonas lactucae CFBP13502)
MTGKTQSPSKIAQLLFGLLAYVSLGIGLVAIVIPGLPTTEFILLAAWAATKSSPRLSAWL
ENHRLFGPILYNWRNGRIIARRAKVSATVSMVLCAMLMLVMLDHGWPIYLAIAGMGLGNL
WIWSRPERFVAPI