Protein Info for Echvi_4572 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1329 TIGR00229: PAS domain S-box protein" amino acids 163 to 282 (120 residues), 68.3 bits, see alignment E=3.3e-23 amino acids 424 to 552 (129 residues), 71.6 bits, see alignment E=3.3e-24 amino acids 556 to 678 (123 residues), 23 bits, see alignment E=3.6e-09 PF00989: PAS" amino acids 165 to 273 (109 residues), 27.9 bits, see alignment E=7.9e-10 amino acids 425 to 542 (118 residues), 47.3 bits, see alignment E=7.8e-16 PF08448: PAS_4" amino acids 170 to 278 (109 residues), 40.8 bits, see alignment E=9.2e-14 amino acids 424 to 546 (123 residues), 23.3 bits, see alignment E=2.6e-08 amino acids 564 to 670 (107 residues), 42.1 bits, see alignment E=3.8e-14 PF13426: PAS_9" amino acids 177 to 275 (99 residues), 22.3 bits, see alignment 5.4e-08 amino acids 345 to 401 (57 residues), 17.4 bits, see alignment (E = 1.8e-06) amino acids 428 to 544 (117 residues), 52.2 bits, see alignment E=2.5e-17 PF00512: HisKA" amino acids 691 to 756 (66 residues), 78.3 bits, see alignment 1.5e-25 PF02518: HATPase_c" amino acids 804 to 918 (115 residues), 80.6 bits, see alignment E=4.7e-26 PF00072: Response_reg" amino acids 938 to 1049 (112 residues), 73.8 bits, see alignment E=5.1e-24 amino acids 1079 to 1191 (113 residues), 83.5 bits, see alignment E=4.9e-27

Best Hits

Predicted SEED Role

"multi-sensor hybrid histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G7B6 at UniProt or InterPro

Protein Sequence (1329 amino acids)

>Echvi_4572 PAS domain S-box (Echinicola vietnamensis KMM 6221, DSM 17526)
MSDIFTNIRYSTLIKNIDPSVKTTNPPYQQNAKLLKAALKLTPFKSGIIVITKDKGLQPV
VETNLEDGSFEVDVKLLTKLLEHTESASIKDLPIRIGASKTQQGILAPFNIGMQKNKGAF
LLFNTETAPLPDREILETVGILADTFGRSVGPDPISTEKHYGENQFRDFFENSMGLMCAH
DLEGNFLMANKASANSLGFHKGELVGKSLSDVIPLQYHGSLKQYLKYIRQNGNSQGTMHV
QHKDGSIRIWLYSNILLNDQAGTPYVLGNALDITERHRLEREYNRLKEMLEQTNSVARVG
GWEIDLLKNEIYWSNVTREIHEVGDDFIPNTEKAIGFYKEGKHREAIQKAFENAIHKGEP
YDLELILVTPKGKEIWTRAIGKPEFKDGTCIRVFGTFQDITVQKMAEMEIIKSKKLLEDV
QNASSEVSIISTDTEGIITVFNKGAEKMLGYTAEEMVGKQTPAVIHEPKEVKERSKVLSK
QYEKPIEGFRVFVHKSELDGAEEREWTYIRKDGSRLAVSLAVTTMRHESGKITGYLGMAT
DITKRKKAEKALTIEKARLNAFVTHAPAAVAMFDKEIRYIAYSNRWLEEYQLEGKDLYGK
SHYEVFGTISEEWKAIHARCLKGEVISNEEDRWRPDGWDHDQFLRWEVRPWHHYDGSIGG
IMMLTQDITESCLQREELKKAKILAEQASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKT
DLSETQAQYLSIVNQSGNALLNIINDILDFSKIEAGKLELDIDRCDLYELTEQTSDIITY
EVHKKGLEMLLNIHPDIPRFIWVDSVRVKQIMVNLLGNASKFTEEGEIELQLYPIDKDEA
SREMVIRFSVRDTGIGIKAEKQTKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMHSG
LQLHSTVGKGSTFYFDLNVKYEYGERITLEEDLSVENVLIVDDNDNNRMIIERMMALRGI
STSQAKNGFEAIQKFVEGEKFDVVLMDYHMPYMNGIETIRKIREIVDRQPIIFLHSSSDD
DKILKACKELGVRKKLVKPIKLQEMYDALLSINKKQDYRKATDQNIDLPKNLFPNDGKVL
IVEDNTINMLLAKTVIHNLSPATAILEAANGKEALEVMKDELPSVIFMDVQMPEMNGYEA
TQAIRKKYNKHNILIIALTAGNIKGEREKCMQAGMNDFIAKPFVEEDVIKLMEKWHFNDL
DSDLKIHAPSSESPSKRLFDIDKFQAVLGFPDLESEMFQIILKSGKSELEKSEATFLEIL
QNQDEGISQAAHKLYSTASAMYLSKLSTLATKMETRKFHDFNDPGLAEEIKQILEEIKKA
LVEINLHVK