Protein Info for Echvi_4382 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Relaxase/Mobilisation nuclease domain.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 PF03432: Relaxase" amino acids 43 to 206 (164 residues), 52 bits, see alignment E=4e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G6F2 at UniProt or InterPro

Protein Sequence (422 amino acids)

>Echvi_4382 Relaxase/Mobilisation nuclease domain. (Echinicola vietnamensis KMM 6221, DSM 17526)
MMAVIKVGRNINSILYYHFRKISEGKADLITVHGFGGQGERMDRKELNAYFRSYTLRNNR
VKVNAIHIFLHFSQTDSLDKRSLRYIAQQYMKRIGYGKQPYVVFNHTDSYKPHIHVLSTT
ISKNGKRLETHHLGKTLSKKACRELVAEMGRHSSPQPPEQHSYPARLEKLEYGKTETLGR
MESIIKGVLRQYTFGSIAEFAAVLHQFNVGLVQGKRGGRMWRNRGLAYCPLDDHGRHLGG
LVKASSLSLRPTFGSITNRMERNKRVSPSKVAEAKERFLEVQDNMVKDALMDLDGTFKKN
GFAISIQMGRDKKRAIAIDHLNRTTFTISGKLLREVSRQVAIKLVERYPVIQEALEEKSS
NGGHEETVDNAYRKEEIPVWKLDTAPEFQKFVERVSRLRDVLPKQSISLPRSRNSKFSPN
RS