Protein Info for Echvi_4344 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: SusD family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF14322: SusD-like_3" amino acids 102 to 224 (123 residues), 52.7 bits, see alignment E=7.3e-18 PF07980: SusD_RagB" amino acids 376 to 495 (120 residues), 77.9 bits, see alignment E=1.1e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G6S1 at UniProt or InterPro

Protein Sequence (497 amino acids)

>Echvi_4344 SusD family. (Echinicola vietnamensis KMM 6221, DSM 17526)
MKSMKIKLMQAAVCLGMLSPMVSCTGNLELTPTSEITVAGFWTSEDNARGALNGMYVRFR
DQSASNLFIWGEGRSGTLTYGLQASEGLERYFENTIDPNFAGPDWLRMYTVVHDANLLIA
YVPEIGFTNEADKNRMLAEAYTMRAFVYYTMAKTWGGVPLVISPTEGYDAETTFRERSSV
EAIFTQVKEDLNTALSLYPDNSLAAGKASWSKPAANALKGDVYLWTAKQLDGGNTDFQTA
LEALQEADVSALELLPNYDDIFRYDNKGNNEILMAVHFRDLESGTNYNSGMYIRDDQIPA
GAAPEVIAQVGQGGGLNRWGPSPVVTSAFSNGDQRKNATFLSLTVPDEEGQMEPYANIVT
KLKGYIDPSGRRFLDDVVLYRYADLLLMIAEAKNALGMDPSEEINRVRARAYGQDFEAHR
FVDLGQVANDEAILQERLLELAYEGKRWWDLVRFDKEFELVPSLQGRENEQYLTLWPISL
NTISLNSKIIQNPGYGN