Protein Info for Echvi_4259 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Y_Y_Y domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1360 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 774 to 794 (21 residues), see Phobius details PF07494: Reg_prop" amino acids 42 to 65 (24 residues), 26.2 bits, see alignment (E = 1.8e-09) amino acids 574 to 596 (23 residues), 16.6 bits, see alignment (E = 2.5e-06) PF07495: Y_Y_Y" amino acids 704 to 766 (63 residues), 52.4 bits, see alignment 1.4e-17 PF00512: HisKA" amino acids 822 to 885 (64 residues), 34.5 bits, see alignment 5.9e-12 PF02518: HATPase_c" amino acids 933 to 1041 (109 residues), 83 bits, see alignment E=7.3e-27 PF00072: Response_reg" amino acids 1097 to 1208 (112 residues), 94.8 bits, see alignment E=1.3e-30 PF12833: HTH_18" amino acids 1263 to 1341 (79 residues), 54 bits, see alignment 6.2e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G558 at UniProt or InterPro

Protein Sequence (1360 amino acids)

>Echvi_4259 His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Y_Y_Y domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family. (Echinicola vietnamensis KMM 6221, DSM 17526)
MMLFRIPLLFIFCLSIQLVLGQDNAQERLTGYERNYIGIESGLSNNAVTAIYQDKKGFVW
IGTYDGLNRYDGYDFLVFRNQPRDTSSLVHNRIVSIYGDRNEVWVGTKRGLSVYDYHTGK
FQARYYEDPKTKRRHKLTANINHITGRDGKIVVATAGQGVMVRADGGPLSRVPLWDAGKR
YYDYHAQGAAVDKDHNVWAFIQGYGLAVRKEEDSCFKVVLKDIKSANCIELDSEGNIWIG
SDYGLARFHVQQKDWYLYPAQITKNKITDIMNVADDGQIWVATDGNGLLVLEKGSEKSYF
LKEGTVPSDLVSNAVYGLALDRQGRKWVGTLRGGVNILEKKQNRFVTVHNPDNLVNGLPS
DFILSFCQTSGDSLWVGTDGGGVSIWDRKRDRYTNYRHRSGKPGSLPNDFVTAIVERENN
LWLATYGGGVCRYDSRADAFVPYTLSNPEGMAHWYIWVLFKDRSGDLWAATSNGEGLYRY
NGQKDRFDFVDVGIYGIISMAQDHNGDYWVGTFDHLVKLDLSVEQDHEVIDIGYPVRDIM
SLGPEDLLVATEGSGIWRFDSGQGTAKTYLQEEGLPNNSVLKMVGDRNGKIWMSTYKGLA
KFDPEGEKFTSFFASDGLQSNQFNYNAGIRLDDGKLAFGGIKGFNLIDPLHQKSEGSFPH
IHLTQLRVNNQPGHPDGKTIFALDKLELPYDQSMVSLDFLALEYAHPEKIAYAYHMEGWD
EKWHFVKNSRMANYSKLREGEYTFHVRATNAQGEWSPQVVSLPISILPPWYRTWWAYGLY
SVIVGGLAGILVLYQRKQDKLKYQVSLSREMARREKELNEKKLNFFTNISHEFRSPLTMI
INPLKEVMYGERKQLEAGAVEVVYRNSKRLLSLVDQLLLFRKVQTEVGNVKMVKLDVIGL
CKEVFSCFIHHAKDLDISYQFHAELDSFEVVADRQKLEIAVFNLVSNALKFVPPHTGKVL
VSAVHASNRFTVTVEDNGKGIGEGDRERIFDLFYQGNSQSGAKGFGIGLYLVKKLVEEHK
GSVDLTDSTWGGAKFTIGLPTGKSHVPDGLVHEDVGEQMVFLEELFDFENNHMPQKTETW
DGLATITDGVVTAKKRVLAVDDNPQLRQYIKRIFETQFQVVLAESAEQALEIVEGQEIDL
IISDVVMKGMNGVELCKELKSREEYRYIPMVLLTASASDSIKLKGIEVGADDYITKPFDK
NYLMARVKGILRQQESVQRHLLTSVSKKPTDRKLSKEDKEFIDKMVKVIEENLDNDGFSI
QVLAVDMCMSHSMLYRKVKLATGKTVNEIIRFVRLRAIATTLITTDAQVNEAVSSAGWHD
LKYFRKQFSQQYGMTPSAFQKKYRGAVTERQYILNAGFFK