Protein Info for Echvi_4122 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted thiol oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF06537: DHOR" amino acids 142 to 400 (259 residues), 196.8 bits, see alignment E=5.3e-62

Best Hits

KEGG orthology group: None (inferred from 61% identity to hhy:Halhy_6614)

Predicted SEED Role

"Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G271 at UniProt or InterPro

Protein Sequence (400 amino acids)

>Echvi_4122 Predicted thiol oxidoreductase (Echinicola vietnamensis KMM 6221, DSM 17526)
MINIKIKYLVLVFLVPLSFYSCEEVFPEAPAENELLDGPMEDLAYSEQNRFLAGDVAFND
EVFTPENGLGPMFVATSCGSCHPGDGKGHPFTTLTRFGQTSPNQSSNIPPGAPQLQNRAI
PGFEPERLPSGVPFMKFTPPAVTGLGLLAALTDAQILENADPNDDDGDGISGIPNYITPP
DYFQPQWFHQSFSGKYIGRFGKKAAAIDLLQQTATAYNQDMGVTSTFESLDVATNLSVDP
EVSDQTIRDVVFYLRTLKAPIQRESDASDVIRGQQIFTDIKCGSCHIPSWTTPESDIGAL
SNKTFYPYTDLLLHDMGPGLDDGATEGSAETYEWRTPPLWGLGLSQDSQGGELFLMHDGR
AKTIEEAINMHGGEASTSRDSFEQLSKTDKQKLLTFLKSL