Protein Info for Echvi_4101 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details PF14293: YWFCY" amino acids 5 to 147 (143 residues), 121.9 bits, see alignment E=1.1e-39

Best Hits

Predicted SEED Role

"Putative mobilization protein BF0133" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>Echvi_4101 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MATGESIEGLRKIIDLTRKGSVGMLCLHFYYTGYSLFCQLGACHSITDRLLAGLAKTGLF
ASPFWTKGIVLFLLLVSLLGSKGKKKEDSKIAPLLVGFLLGSAVFLSCHYWTGEIVWPPN
SFYVYMAITSFSFLAVLSTGARMGRVLFLGNQKNVFNHLNETFPQEERLIENEYSVNLPA
RYRLKNKVRASWINIINPFRALLVAGTPGSGKSYFVIRHVITQHIQKGFSMFIYDYKYDD
LSIIAYNTLLKNLAAYREKPRFFTINFDRLSHSHRCNPLEPETMLDITDASEAARTIMMG
LNREW