Protein Info for Echvi_4046 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 61 to 84 (24 residues), see Phobius details PF00072: Response_reg" amino acids 302 to 412 (111 residues), 63 bits, see alignment E=1.5e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G4K8 at UniProt or InterPro

Protein Sequence (414 amino acids)

>Echvi_4046 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains (Echinicola vietnamensis KMM 6221, DSM 17526)
MLLKRYRVLREYFLYLSLQAKVRMKSSLRIAIIYILVGGSWVTFSSLFLDQKQEDLGLSN
MVIFEVVKAVLFVLASGLLIYLSVERSMKLDRRVWEGYEAVFDNIPISMWVVDRETGKII
NSNNMAGAIFGGKIRRKNAIDFESFFGISTTQIKAVYSAQNQSIKKCELRDRNGETRMVD
LFLVPFHRDRKAKFMVAAVDNTSIHQNMLEKEILNASLKEQNDRLRKFAFMNSHNLRRPL
SNVLGMVNFIKEDQGNKEILEMLRQSTEELDEEVRRMNEILADEMVQNQFDTPMTDLRSK
SILIVDDDKVQHLINKRLLLKNNPQLDLYFFANPIEALLWLEEHKVDLLLLDINMPEMKG
WDFLDQLIERKIEVEVRMLSSSIDPRDEDRSRQYDMVSGFLVKPLKKESLEDIL