Protein Info for Echvi_3873 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: NADPH-dependent FMN reductase.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 PF03358: FMN_red" amino acids 22 to 151 (130 residues), 45 bits, see alignment E=4.4e-16

Best Hits

KEGG orthology group: None (inferred from 75% identity to cly:Celly_3132)

Predicted SEED Role

"BRAMP"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5H7 at UniProt or InterPro

Protein Sequence (244 amino acids)

>Echvi_3873 NADPH-dependent FMN reductase. (Echinicola vietnamensis KMM 6221, DSM 17526)
MNKPNFSNLKAVFVNCTLKKSPETSHTDYLMDVSKQMMKKEKVTIDEMRLVDHEVAYGVY
PDMAERNGQADEWPALSERILAADILVIGTPIWLGEKSSVAQKLIERLYSLSGMTNEKGQ
YLFYGKVGGCMITGNEDGIKHCAMGILYALQHIGYSIPPQADCGWIGEVGPGPSYGDKEW
NGRQLEKPMGFDSDFTNRNTTFMTYNLLHLAAMLKQNGGYPNYGNSRAAWDDGSRWEFEN
PEYR