Protein Info for Echvi_3866 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 64 to 89 (26 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 352 to 370 (19 residues), see Phobius details amino acids 376 to 394 (19 residues), see Phobius details PF10011: DUF2254" amino acids 14 to 388 (375 residues), 413.6 bits, see alignment E=3.3e-128

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G454 at UniProt or InterPro

Protein Sequence (449 amino acids)

>Echvi_3866 Predicted membrane protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MRAKLIYFWSNLQSSFWFVPLLLIVCALLAAFGLVFLDDAVDIKPTGVFGYFMIGSADSA
RSVLSTVAGAMIGVAGTVFSITLVALTLASSQFGPRLLQNFMHDKLNQVVLGSYIATFTY
CLVVLSTVKSSDSVQFLPTISVGFAIILALVNIFLLVIFIHHISINIQADQVVSNVNSGL
NRNFKRLFPKEEDKEEVHEITESEIEQLKEKALFKKVFKIDRSGYLQVVNRQRLIGLAQE
IEGFIELQSHAGHFLVEGQEVFVVYGDKELEEGFEGRLLGAMLIGSKRNSTQDSEFAVRQ
MVEVASRALSPGVNDPYTAITCIDKLTDSICYLTSVNLPGPYRFDEEKKLRLILNTMSFD
GVVSVAFNQIRQFGQSSPAVLIRLMDAMVTIYTLSQRPEHKKVILKHAKMIRQAGKEHFG
ERNDFQDLEERYQKLVKDAESVKSADKVS