Protein Info for Echvi_3803 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Response regulator of the LytR/AlgR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 PF00072: Response_reg" amino acids 4 to 112 (109 residues), 77.2 bits, see alignment E=1.1e-25 PF04397: LytTR" amino acids 141 to 229 (89 residues), 60.2 bits, see alignment E=1.9e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5B8 at UniProt or InterPro

Protein Sequence (238 amino acids)

>Echvi_3803 Response regulator of the LytR/AlgR family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKILIVEDELDLGENLEEILTVLGYSVAPVISDGNLVLDYLRYHQPDLILMDVLIEGDM
DGIELAKRIREVYQIPIIFLTGYSDKMILDRISKVMYEGYLLKPFHIDTLKTCLYLTFKN
QEVPKEKAKPKTLKIRDKGFMVPVPVEDITVLEADGLYTKIHTLSKPYTIRDILKDVTEK
LPDETFLRIHKSFTINVNHIHAYNAKELTVGGQIIPMRRGFLKKLKGILEDRKAIPVN