Protein Info for Echvi_3755 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane cobalamin receptor protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 635 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF07715: Plug" amino acids 53 to 160 (108 residues), 79 bits, see alignment E=1.9e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G364 at UniProt or InterPro

Protein Sequence (635 amino acids)

>Echvi_3755 Outer membrane cobalamin receptor protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MNKHIFTFNKKRGFLPLLLAGVTFWHANAQAQEARNLDEVVVTGTKFELPEEKSGKTIYK
LDQADIERNAGKTITDLLNEVPGIQIDGNFSAPGTNISYFVRGASSKNTLILIDGTPIND
PSLADATYDLRLLPLDQVESIEVLRGGLSTLYGTGASAAVINIKLKSGNQNKTFGGSADF
SGGSFNTYRGNLSLNGQSDRFNYLVSGSLYHSQGFSAAADTVPDVEFGRDGIDRKDLMVK
MGYQFSDRFSLGFLSGYDAMKADYDGGPFLDAQNLQTSNQLRFGLTPTYTYSKGAIKLKS
VYNISEREFISSFPSIYEGRNLQLDLTQEHQLLEGLKGLWGVNLQQLSYEQPGEIVFEDN
QFTLVDPYASFFYDAPSGFNIHVGARVNTHTNYDAKFIYNVNPSYLFDISETVSAKILAS
VATSYVTPTLYQLNSPDYGNSLLNPEESLNYEQGISFYIGNQFTFNLVHFTRDESSPIEF
VSLFDENGGYIGGEYQNTTDQRRVEGFEADFSWLVNQYFSMTANFAHVSTDKPETFYRVP
GSKWGMAFNANPAENTQVSLKYNYTSSRTVYDYGVGGAFDLDSYGLVDLFVQQRLLNDKL
NVYGGVNNLLDEDFNAIYGYTTRGRNFSIGARYQF