Protein Info for Echvi_3754 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Signal transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1386 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 826 to 847 (22 residues), see Phobius details PF07494: Reg_prop" amino acids 48 to 70 (23 residues), 26.4 bits, see alignment (E = 1.8e-09) amino acids 286 to 307 (22 residues), 16.7 bits, see alignment (E = 2.6e-06) amino acids 333 to 355 (23 residues), 19.9 bits, see alignment (E = 2.4e-07) amino acids 381 to 404 (24 residues), 18.1 bits, see alignment (E = 9.1e-07) amino acids 430 to 451 (22 residues), 17.3 bits, see alignment (E = 1.7e-06) amino acids 475 to 496 (22 residues), 16.7 bits, see alignment (E = 2.6e-06) amino acids 570 to 591 (22 residues), 17.7 bits, see alignment (E = 1.2e-06) PF07495: Y_Y_Y" amino acids 758 to 822 (65 residues), 76.9 bits, see alignment 3.6e-25 PF00512: HisKA" amino acids 876 to 940 (65 residues), 51.5 bits, see alignment 3.5e-17 PF02518: HATPase_c" amino acids 988 to 1105 (118 residues), 87.7 bits, see alignment E=3e-28 PF00072: Response_reg" amino acids 1132 to 1242 (111 residues), 83.2 bits, see alignment E=5.9e-27 PF12833: HTH_18" amino acids 1298 to 1376 (79 residues), 69.6 bits, see alignment 9.5e-23

Best Hits

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G4M9 at UniProt or InterPro

Protein Sequence (1386 amino acids)

>Echvi_3754 Signal transduction histidine kinase (Echinicola vietnamensis KMM 6221, DSM 17526)
MAIPNDPNSQMKCSFTPLLYVCFLLLGLSDAFAQKGDYLFGTFTVEDGLSNNSVTAIYQD
KEGFIWMGTNSGLNRYDGKEFRVFRNRPNDTTSLTENSIRKIMPGPEGQLWLLNRNNLVE
VYDAKTETFSTSLGPYVAKYHLLSDIVSLVYEDRQGRFWFGHPNQGISIYDPTSGETIYL
QHVSGDIESISYQYLSAVDETSQGEVWLVYSNGAVDILDGKTLKVNRRIELFAQKKVNYT
DDFEIFIDQEDDAWIYLYENGEGLFYYDSYVDRLHHFDTDSKKITLNNNQVRGIVENKSG
EIWIGTDHGGINIVDKTDMRVSYLQHDAENPHSLAHNSVYALMKDRSGIIWVGTFKNGIN
LYNEKLIRFPHVKHSLTAQHSLPYNDINCFVEDEKGNFYIGTNGRGLLYYDRERQRYTSF
RHEAGNENSLAGDIIVDLMMDSQGVLWIGTYLNGLSKYDGKQFKNYWPNANDPRSLAGES
VWELYEDQQGNVWAGTLRNGLDLYDPETDGFIHFKANESTIPVHCDYISSLQEDLEGNLW
IGGGNGIDVINFQTGAATFYQQVLGDQSTLVGNNIMDIFRDSKGIMWVATTQGLSYFDAE
NERFYNFNATDGLPSDHIVKILEDDQYHLWLSTTNGLSEVSVNRNQPDSLVLSFRNFGVG
DGLQGNFFNENSALKTSQGELVFGGANGYNIFYPEKMKVNQESPKIVLTDFQLFNKAVDI
GEKVSGRVLLEKNINQTEKLTLKHNENVFSIEFAALNFIHSDKNRYRYKMEGFDNDWVEV
EDGVTKATYTNLDPGNYTFKVKAANNDGIWAEKAQLLNIEVLAPFWKTPLAFLIYFILVA
LVVIAIQREIIAREKDRLQIAQDKEEAKRMQELDRMKTKFFTNVSHEFRTPLTLILAPVE
KLLKSTDSPQTRSHYLTIQRNAKRLMNLINQLLDIRKIETEGIDLSPVEGDVIGFLRETT
RSFEDLSEKKHIALDFHTNRAQLFTYFDVDKLEKILFNLLSNAFKFTYRGGEIHVAAHYE
KPLPGKEKGVLSISVQDTGVGIGKEDQQRIFERYFVGDENSDSLNQGSGIGLSIVQEFAR
LHRGEVLLESELGRGSTFTVRIPVEEIVPMEHVSTDPELDQETADRSEKKTVLLVEDNED
FVHYLKSCLVEEYNVLTALDGQQGSEIAFEQIPDMVISDVMMPKMNGVELCQLLKKDLRT
SHIPVILLTAKSSEEKQLEGLDSGANHYITKPFNVDLLLLRIRNLLEERSLLQERFKKRI
GVITSEVKLESLDDRLIQKAVKVVEDNIDNPELSVEMLSSELAMSRVHLYKKLTSLTGKK
PLEFIRMIRLERACQLLGESQLTVAEVAYEVGYNNAKYFTKHFKAEYQVIPSVYAQQKLA
AAQKET