Protein Info for Echvi_3615 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Cell wall-associated hydrolases (invasion-associated proteins)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF08239: SH3_3" amino acids 108 to 159 (52 residues), 48 bits, see alignment 2.3e-16 PF06347: SH3_4" amino acids 110 to 156 (47 residues), 22.8 bits, see alignment 1.2e-08 PF18348: SH3_16" amino acids 112 to 158 (47 residues), 47.3 bits, see alignment 2.9e-16 PF00877: NLPC_P60" amino acids 257 to 355 (99 residues), 70.1 bits, see alignment E=2.8e-23

Best Hits

KEGG orthology group: None (inferred from 53% identity to fbc:FB2170_06045)

Predicted SEED Role

"L-alanyl-gamma-D-glutamyl-L-diamino acid endopeptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G485 at UniProt or InterPro

Protein Sequence (391 amino acids)

>Echvi_3615 Cell wall-associated hydrolases (invasion-associated proteins) (Echinicola vietnamensis KMM 6221, DSM 17526)
MKYINTLRISGFLLLIGLMVGCQPGEDKTTDVSPLINQIKEGFAPDKRVALFDIEYEQDT
LKGQTNLPDALDELTKKMDSAGISYTNSVQLLPEASLEGKTYGVVTISVANIRSAPKHSA
ELATQATMGTPLNVLKKDGSWYLVQTPDQYISWVDAAGIEVMDKKAFDQWENSPKVVFTG
LLGYVYESEDKSMMVSDLTAGNLLRQVAEDQNHYQVALPDGRQGFLDKNLAMPFDEWITS
RSLSDQNLISTAKNMMGVPYLWGGTSIKGVDCSGFTKTVYFLNGQVIPRDASQQVHEGEL
VDTEKNWDKLEVGDLLFFGRKATGDRPERIVHVGMWIGNDSFIHSRGRVRISSFDPDSPN
YDEYELGRYLRTKRIRQVPSEHIIEVSKAMN