Protein Info for Echvi_3608 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF14559: TPR_19" amino acids 74 to 124 (51 residues), 30.3 bits, see alignment 1.1e-10 PF19413: YaiO" amino acids 181 to 351 (171 residues), 203.3 bits, see alignment E=7.5e-64 TIGR04390: outer membrane protein, YaiO family" amino acids 182 to 410 (229 residues), 190.9 bits, see alignment E=1.7e-60

Best Hits

Predicted SEED Role

"FIG00653267: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0U3 at UniProt or InterPro

Protein Sequence (410 amino acids)

>Echvi_3608 Uncharacterized protein conserved in bacteria (Echinicola vietnamensis KMM 6221, DSM 17526)
MKYSKLFIVIFMVLVTHHVDAQTSFNPDKKFLEARDLALNGQRDEAIELGLQIVEKYPGY
SDVWILLGRVNAWEGRYDSASVYFEKAIEQSPDYEDAYNGYLDNLFWGEQYDKAESVLER
AEKEFGPNTSSALTYRKSRLYYYREEYEEALDIAEDLYAKKADIDGLLSYISNLKRYTRN
SAVGMTVDYDSFQGEISPWQTYALYARTRLGFMGSVIARATHSHRFDSNGTQYEIDAYPS
LGKNSYAYVNVGFSNASFFPDYRFGTSIYWSLPKAFEFDIGYRHLKFSEITHILTASVGK
YTGNWWLNLRANHVPSSSGGSISGNIQARYYFKGAEDYLMVQFSTGVSPDEEDRDLQSQL
LDSYRGRVGYQQLWTPRWMGYAFLGYSYDELSPGNYRPNLNISVGTEFRF