Protein Info for Echvi_3597 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Phage tail sheath protein FI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 693 PF17482: Phage_sheath_1C" amino acids 582 to 686 (105 residues), 47.6 bits, see alignment E=7.7e-17

Best Hits

Predicted SEED Role

"Phage tail sheath protein FI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G3C1 at UniProt or InterPro

Protein Sequence (693 amino acids)

>Echvi_3597 Phage tail sheath protein FI (Echinicola vietnamensis KMM 6221, DSM 17526)
MATSYKTPGVYIEEITKFPPSVAQVETAIPAFIGYTEFAKTKPQVESNDLTLKPKRISSL
LEYTIYFGMGQNEQGISVKLTDSLVNGEETRTINVPEPTIKSPYLMYYSLQMYFANGGGP
CYIVSVGTYDEWSDESTPPTIAFNELNAGLSAVRKEDEPTLLLFPDATNLASDDDFYALY
NNALMQCNDLQDRFTILDTFSDQTYNNGTEDVEPIPALRNGINLTKDYLKYGAAYYPFIQ
TIINYQYRTDEIVIDHISYNPNAIATAMENLNAVNGPTALPATITALRDISGANIAGKIL
DTVAFMHDGTDGFGIGGTFATNSVKVNDFAALVESLLVSLNELVEAKSQINKDANAAIAS
AEEDNTIKTAIADALTTFNVDFEGDDKIESTTDNLQELLIKIKQADTNTKVENILTANTL
NFSDELEKLLTYDVAAGTTASITLDLFANIETNLAAIITAVDAAEPIDVNNGRLNGRLLS
DIEPLDNATFNTILAEINAHRVILPPSAAMAGAYARVDNDRGVWKSPANIGLNYVSKPTV
PISHEDQESMNIHGTGKSINAIRTFVGKGTLVWGARTLAGNDNEWRYISVRRFFNMAEES
IKKATEQFVFEPNDGNTWVRVRAMIENFLTLQWRAGALAGAKPEHAFYVRVGLGQTMTSL
DILEGRMNVEIGLAVVRPAEFIILKFSHKMQES