Protein Info for Echvi_3589 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Baseplate J-like protein.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

Predicted SEED Role

"FIG00655675: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G4P7 at UniProt or InterPro

Protein Sequence (1100 amino acids)

>Echvi_3589 Baseplate J-like protein. (Echinicola vietnamensis KMM 6221, DSM 17526)
MSADCNHIVDILNRDGTGRPDLGLGHLSPDKVKLQDFELGDWYAFALNFSRHVHYYTKES
EKKPVGDWKNFFGKILKDTSWLNDVSDQKKLEILKASFDDFLVEKAQTKDLTPHLTLFVC
FIKLLQITQDRFNKLTKRHLDFYYQEILQMEKEPLKPDHVYLIFELAKNLSNMKLDKGTA
LDGGKDTEGTKRTYVTAEETIINKAQVQALKSVFNDVIIDKAAIHQLDTSDQTGTMVMAP
IANSYDGQGADFPKESQKWWPFGYTKNCNASTQMPSLPSARLGFTIGSELLYLAEGNRWI
TMILQFEKDILDAPISIDQLKQAIKPELTGEKGWIGAETFVIENEPAFIDDPIGNHKIIL
QINLDESAEAVVGYDAEIHGGNYTVQSPLIRVLFRIENKEGYNLYRLLNENPLQLVTIQT
DVFDVQQIRIENDLGALNPSKPFYPFGPRALKGASFSLSYGEAMSKPLKEINFSMDYLNT
PDDFAEHYVAYNAAPVHKEIKESLKKEQAKESPKFNKTVIADYYDSKMEKLKDSALPNQM
VSLGHTVTGDDYFKVNKYPDDDAESLSLFQKNGAAYSSAFSFNNPKWSAGDEKSLKISLV
NSFLHEKYPHYFTIAAIEGKDGISDPSELPNEPYTPLSENLRLNYSASDTIDFRSESADK
NIHLIHEEPFGHTAVFSPEQTTPTKQVLLVPTFCHGGELYIGLDSALPLQQITLLFQFLE
GSENPVAKDIFTGKQQIKWDYLKENAWEEIKSSDILLNQSPRFLKSGVFRFSLPKDATKE
NTKLPAGLHWIRASMKKPYDVVCQLVDIKAQAVEAVFEDKGNTGDHLTNGLPAGSISKLQ
QRISSIKSLSQPYSSFGGKAQEEDDSYYRRVSERLRHKKRAITLWDYEHLILQHFPKVYK
VKCLNHTCEQAFQSPGNVTIILVPDTVKQAVYDIYQPRVSQATLNEVSSFINELNSFHVQ
AKVINPNYEEVKVDTKVKFREGFDVSFYEIQLQEDLKRLLSPWAYDQNVTVQFGVTLHRS
QLIHYMEELPYVDYLEDVKLKKRNPSSPPCSPSFEEVSTKDYIRPLNPKSILVSAKSHKV
TPITETCSSEPQETQEKCQH