Protein Info for Echvi_3587 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: FOG: PKD repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1432 PF18911: PKD_4" amino acids 993 to 1072 (80 residues), 32.4 bits, see alignment 8e-12 PF00801: PKD" amino acids 997 to 1043 (47 residues), 24.1 bits, see alignment (E = 3e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G3B2 at UniProt or InterPro

Protein Sequence (1432 amino acids)

>Echvi_3587 FOG: PKD repeat (Echinicola vietnamensis KMM 6221, DSM 17526)
MANKLSTITTQYHTYKVDQVLTHTQLNESIAFFEDQDRLTRVFLNGVGIVCGFNVSKPYT
GTVRITQGIGVTTDGDMFKLLQETSDPEQPGLEMVTGALDYTYFREFEDLHGNYSKFTDA
DDNQLTLFEIIPEAKRTETDTPLTDYGNLDEWIVVLYLETFSKEADMCSGIDCDNQGVEQ
VARLRVLLTNEEGAQHLLSKDNIYQKLNAQKIYRELNKIKLKRVLLSSSNTQTLQKLENS
YYDSITDTEIEKLADGLKTIADLFGADLQVDRLNFFKERPNIKFVNPFQYHYDWLRDVIA
TYHELIETLFALNATCLPDITAFPKHLLLGYIGNIDQSEQYRHSFYKSPITGDTSITANM
QSLLTRLNITLSAFQTTGKTIQITPSQFSGKLSEMAIPFYYKPSGSLLDNWSFKKQQRRE
TAEIYQYDHKIQQQESIDLPALEYDLTGVDFYRIEGHQGKTADQALTNLNDMIHRYNLDF
DVKILSINEVLENIRMEDYKCQFEDLMVLLDAWNQELSCIAGKISKYFTELNLAEVLAES
EEEKKEVIPEKKTKDYRGLYQDDTITLETVMDMISRGKITYAQAIKYYPELFKEAKSRKT
NSKEEYFKSVTENVATEEGKFGLVVDKVLKAQKDTPFTIDKFKVEAQKEAELFIGEIELS
EEVRKAVVDKPIDIIGSTLDIGLKIPERLSELDENYLKGYGESIDRLCKELSAFKRGVKK
LAIRDQVKSEFQSQAVFFSSICCADKKLAVLQKEIKARKENILAELQLHNFLKHHPGLDH
RAGVTKGGTFVMVYFSNQSNNQVNAVEAIEGLTLTGRGEIEMRNKAALTSKIISDHKLFT
GIGDFASDAALLEAKMKELETANFLTDFTKARAIDIRPYKRTLKDKTIIADFMLPYRCCS
DCNPINFIVPRPVVSLVLRAETYCLGLEQEPVSFDVIPKDGTVSVAEEVPGVVISGQFIS
IDPETFPTEMLGKPIEFTVNDEPTDARLVVHEAPLFTIKLPEQPVINGLEVSFQASQTFD
KASYDWDFGDGSSADIPAPKHTYDLGEEVKSVTISLTITPENGACPETVSEEIEISHIII
DDTIDLALEPNEFCRDRDRTPVPFDVVPEDARVEGTGVTTNQEGKFVFSPQMVPQSQLGK
DIADFKVNGQEMDLIVRVYQSPHLLIDTKIAHLGPNEGNTVTFTVTNPPTAGKQYQWIID
GEEQETTEATTYSQTFKPEVKSMKVMVKAQLSNLCEEASSDEITVQLGDRNEGNCMDTGK
ATAEAMLRSHQEFMASPSFKEIGQWGQETMQEALRVMSQVVQNMDSMQSGEENEKLPTIF
SDQLDKLVMYIIEMAPGNGPGVGPMQTLYSDYIRLFYLVLRCQSAEMLEASQEHVQQVMD
TITKGYNTLAEAEITWDRDKTMLAFYEEVMPFFEKVEYIMDTINSQLEILNK