Protein Info for Echvi_3546 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ABC-type Mn2+/Zn2+ transport systems, permease components

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 43 to 63 (21 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 125 to 141 (17 residues), see Phobius details amino acids 146 to 164 (19 residues), see Phobius details amino acids 191 to 217 (27 residues), see Phobius details amino acids 229 to 253 (25 residues), see Phobius details amino acids 260 to 279 (20 residues), see Phobius details PF00950: ABC-3" amino acids 15 to 277 (263 residues), 222.4 bits, see alignment E=1.1e-69 PF01032: FecCD" amino acids 53 to 277 (225 residues), 34.8 bits, see alignment E=1.5e-12 PF02742: Fe_dep_repr_C" amino acids 356 to 424 (69 residues), 83.4 bits, see alignment E=1.4e-27

Best Hits

Predicted SEED Role

"Manganese ABC transporter, inner membrane permease protein SitC" in subsystem Transport of Manganese

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2J1 at UniProt or InterPro

Protein Sequence (430 amino acids)

>Echvi_3546 ABC-type Mn2+/Zn2+ transport systems, permease components (Echinicola vietnamensis KMM 6221, DSM 17526)
MEEFIYFFSFQDPNVLMVVTGIVLLSISAAMVGTFTFLDKKALVGDAISHAVLPGVCLAF
MFSGSKNPFWIVSGAFVTGALSTYTITWVSNYTKLKEDTVIASILSIFFGVGIVMMTQLQ
QTGNASLSGLDHFIFGNAISIVGQDLWVYGFLALAIIMVILVFYKEFQLMVFNRSFAESV
GLPVKRLEFLFNSLMVLAVVTGIQAIGVVLMAALLITPAAAAKFWTNRLSLMLVIAVIFS
VISGITGAYISFVLPHMPTGPWVVMVLSLIAFLSFFFSTKKGIMTKWISKRNYQRKIHRD
HILKALFAATEQGKDGLSAGDIFTNFPGKSFRTQYAINKLNKGGYINDSQSLISLTQKGH
QEAGRIVRLHRLWELYMTEYMNIAPDHVHDSAEKLEHIITPELERQLDKNLNFPQEDPHQ
SIIPRDKDKS