Protein Info for Echvi_3533 in Echinicola vietnamensis KMM 6221, DSM 17526
Annotation: 6-phospho 3-hexuloisomerase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 49% identical to PHI_MYCGS: 3-hexulose-6-phosphate isomerase (rmpB) from Mycobacterium gastri
KEGG orthology group: K08094, 6-phospho-3-hexuloisomerase [EC: 5.3.1.27] (inferred from 60% identity to zpr:ZPR_1062)Predicted SEED Role
"6-phospho-3-hexuloisomerase" in subsystem Formaldehyde assimilation: Ribulose monophosphate pathway
MetaCyc Pathways
- formaldehyde assimilation II (assimilatory RuMP Cycle) (9/9 steps found)
- formaldehyde oxidation I (5/6 steps found)
- pentose phosphate pathway (oxidative branch) II (2/2 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 5.3.1.27
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See L0G0M7 at UniProt or InterPro
Protein Sequence (195 amino acids)
>Echvi_3533 6-phospho 3-hexuloisomerase (Echinicola vietnamensis KMM 6221, DSM 17526) MWNESEMTTENSTISNAITRILSEHEQLFSRIQLENLDDVVQSLHDANRIFLIGAGRTGF MIKAAAMRLMHLGYTVYVVGETNTPAISNGDLLLAASGSGTTGSIVKAAETARKSGAAVI SFSTNQDAPLAQLAQHSVIIPAAGKQEFHTSISAQYAGSLFEQSFLILFDGLVHFLWKKS KTSPEELWTRHANME