Protein Info for Echvi_3530 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Redoxin.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 607 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF08534: Redoxin" amino acids 479 to 577 (99 residues), 36.7 bits, see alignment E=3.7e-13 PF13905: Thioredoxin_8" amino acids 481 to 576 (96 residues), 31.8 bits, see alignment E=1.5e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G405 at UniProt or InterPro

Protein Sequence (607 amino acids)

>Echvi_3530 Redoxin. (Echinicola vietnamensis KMM 6221, DSM 17526)
MSFLLLCFVSLTFCKAFQDLKSSQEISLESSTPSVKAPIINGDTARLEGYIKGYDSSLEF
TTGIIYVEDVMEHASFPVVVKVFPDGRFEGKWPLLFPSYTSMKMGNHWIPIYMEPGKTLT
MILDKEDFEEGAKRRDSQYQFKHTQFKGPLAQVNSQLQGYKFEQFNYNRLEDQVKSYTPV
EFKERQMTLHQKQMERAKAYIDGNDIDPKAASIINNEILTKNAIVLFDFEARRRYLAERD
TSASLQNNEVLSKPVSENYYDFLQEMPLDDKALMVSDEFSTFVNRFEFSQPFTSNNPTFH
IPLRQPDKDLLLDFLDQKGIELSEMDRKLITISLEDEKTKEDSLFLQAHEDSLQLFAQKH
GPILKEFFKRSMKDQQPSKLAYYKAYWSNRDSVLVHQLGLKDSWTYEVTKIRNLEFALDF
IGPEEAGEYWESLKAGLNYEELQRKGQEIYDKVVLERESQPYAIEGEGAEIFKEIIAPFK
GKVLFVDFWATTCGPCVYTIKKMKGTREQYKNKGDIAFIFITDIKGSPEKKYQVFIDDQE
LEHSYKLSVDEHNMLRQLFKFNGIPRYVVIDREGKVYDDDFAMHNFNAELPRILAANPSE
EGVKTGD