Protein Info for Echvi_3516 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Relaxase/Mobilisation nuclease domain.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 PF03432: Relaxase" amino acids 17 to 149 (133 residues), 118.5 bits, see alignment E=1.3e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2G6 at UniProt or InterPro

Protein Sequence (391 amino acids)

>Echvi_3516 Relaxase/Mobilisation nuclease domain. (Echinicola vietnamensis KMM 6221, DSM 17526)
MIAKQSIGKNFMGALDYNLKKMVASDEGKRAEVLETNFTSLDREMVQREVELMKSMNPGL
KRNTYHVSLSFGKEEKISNAKMLSIAGEYLKGMGFDDNAYVIFRHHDADHSHCHLLALRN
RFDGSVVSDSNNFRRSESLVRKLEKKYGLQQVKSSKEAKIKAPNKDEIEMVMRTGKPSKK
MVLQQIVGEALNQTNTMADFIQKVEVAGANLLFNQASTGRVSGVAYCYGGFKAKGQSLGN
QFKWKNIANTLNYEQTRDRQAIGQANTRTTSKYPGGLSGNGQKATRVHGVHSQDPGQSPA
HQQKAGQTERSDRDKLSVRSKNEIQFGTDKNGPSKSAGITAKDGKEIGLGHQIIGSAIDI
LDLLLRPVPTAEEVDPIPRKKKKKRKKGRSI