Protein Info for Echvi_3442 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Putative transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 PF02622: DUF179" amino acids 19 to 173 (155 residues), 150.9 bits, see alignment E=1.5e-48

Best Hits

Swiss-Prot: 51% identical to Y1773_CYTH3: UPF0301 protein CHU_1773 (CHU_1773) from Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 52% identity to mtt:Ftrac_0222)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G4A9 at UniProt or InterPro

Protein Sequence (189 amino acids)

>Echvi_3442 Putative transcriptional regulator (Echinicola vietnamensis KMM 6221, DSM 17526)
MEEKKHISPQSGQLLISEPFLQDENFVRSVVLLCESNENGSFGLVLNKLSILRIKDLLDE
LEFLDMEVFVGGPVEQNTLHFIYWGDPVIEGSVQLAKDLYWGGNFEEFVLKYKAGQLNLD
HFRFFIGYSGWSSGQLEEELSEKTWIICEDIDAEAIFTSSPDDLWRVALRNMGGDFQVLA
NYPIDPRLN