Protein Info for Echvi_3403 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Pectate lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1577 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF00041: fn3" amino acids 442 to 509 (68 residues), 29.6 bits, see alignment (E = 2.3e-10) PF13385: Laminin_G_3" amino acids 684 to 841 (158 residues), 95.5 bits, see alignment E=1.3e-30 amino acids 1003 to 1160 (158 residues), 77.9 bits, see alignment E=3.4e-25 PF02210: Laminin_G_2" amino acids 731 to 831 (101 residues), 26.5 bits, see alignment 2.7e-09 PF00942: CBM_3" amino acids 1171 to 1252 (82 residues), 51.1 bits, see alignment 5.2e-17 amino acids 1327 to 1406 (80 residues), 73.2 bits, see alignment 6.7e-24 TIGR04183: Por secretion system C-terminal sorting domain" amino acids 1504 to 1577 (74 residues), 43.9 bits, see alignment 9.1e-16 PF18962: Por_Secre_tail" amino acids 1504 to 1575 (72 residues), 51.1 bits, see alignment 4.6e-17

Best Hits

Predicted SEED Role

"COG3866 Pectate lyase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2U2 at UniProt or InterPro

Protein Sequence (1577 amino acids)

>Echvi_3403 Pectate lyase (Echinicola vietnamensis KMM 6221, DSM 17526)
MQQRFTKLSLKAAKCCLWVLLCLMVPDLSLYAQTIAFPGAEGAGQMAVGGRYGEVYIVTN
LNDSGPGSFRDAVSEPNRIVVFEVGGIIQTNSRIVVAHNVTIAGQTAPGDGVVIYGDGIT
FTQASNSIVRYLRVRMGRYGTSGADAMTMTDDAKHLIFDHVSASWGRDETFSITGYADSI
TIQNSIISQGLETHSCGGLLEPSGLISLFRNLYIDNNTRNPKVKNRNQFVNNVVYNWGRG
GGYIMGGSSAESRVNIVNNYYIDGPSTSIRPFSRGTESFIPYVSGNYHDGNLNGALDGEL
VPLSAYEGITTFADEPYDYPFPATVMTAQESYDYVLEHVGANYPTRDQVDEFLMTELTSL
GLEGKLISNERELPMGGPGQVFGAPAKDDGDRDGIPDEWEMANGLDPADPADAMEIAADG
YANIEHYINGLLDQAPGDFLKPISQVGAEEVTSNSMKLNWTNNDSRYEGIVLEIKEGDGD
ALFLDSLAGNTVTYQVDSLLPNTNYQFRLLPYHAELEAIATVSSSFKTIPIPTAPSAPMA
VLPDDGARFTDTVSLSLEWSGSENTDYYEVYFGEHPEELVQLDSITDQTMTLDSLAAGTV
YYWRVDAGNQLGITTGNVWSFTTRPYIPRGLVGAWLMDASTGTLVADSTDFRNDGEVNDL
NDYSWVSGKVNNALDMTTADNPSHVFIPHAEQLYFDNHSFAISMWLKSTAGSSQSYLIHK
GTFSADESTGGTGQWYGIEIKDGDLRFAIDDNKDKTQLSTSASPIFTGEWVHLVAIRDVE
EGVLRLYIDGEEIKEVADGTHQSIGQEEPIILGNSNGFGTPFRGNIDEVRLFNKSLSAQE
VLELYHTLPTPLKAFSPSLGEGDVLEGFDDRVPVSWNGGVNTTQYEVYLGTHPDSLVLQG
TVPVDTPQYELENLQKQTTYSWRVDAIGPKGTTMGNVWTFRAAAPAGLVGYWKMDESTGT
MVKDHGPFDQDSQAQGFGSTDRVAGKFGQAYAFDEPSATASIDIAHEEQLLFDETSFTIS
MWIKIAEDTYRYADGKDCYLIHKGSFADNWYGIQLRDGRLTFGIDDDRTKTTITTSVGNS
TSHPIFTDEWVHLVAIRDKEDGQIRFFINGEKTAETGYSTGKIGKTTPVRLGNSDEDKPY
RDLMDDVRLYNYALDASEIAALYHAFPRMSVSYKNGDASSPLNSQIKPYFKLINMDTMSV
DLGNITAKYWLTPEQVDVIKTRVDYAPFGEDQVAMEYVRLDGPREGAYGYVQYDFGSGNV
IPSGQNSGEIKSAIYDEDWSALDESNDYSMLPVTTYTVQDKITLYADGKLIWGEEPQPVA
TQQSVSVMAKNESSKDNTIKKVFNLKNTGNVPLDYEGISIRYWFTKDGGGALTFWKDYAE
LGSENLEGTFMAVEASTAMADHYLDITFDGTLGQIAPLSETGTLKVRITKTDWTDFDLTN
DYSNNQNSGWMEQDRIAIYYYGKLLFGEMPTMDGDSTAMARKNLSDEGSSKRVEEEREVS
TVKIYPNPTQDKLQIKVAASSTKPVEVSIFNTNGILMERRTIEDSTTTWDVSHYASGIYF
MYVNRSGMRTVHKVIKE