Protein Info for Echvi_3395 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1033 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 31 to 1033 (1003 residues), 539.1 bits, see alignment E=1.4e-165 PF07715: Plug" amino acids 135 to 235 (101 residues), 48.1 bits, see alignment E=7.3e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G464 at UniProt or InterPro

Protein Sequence (1033 amino acids)

>Echvi_3395 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MEGTMIKQHKVALLIAVMMVLAFGAHAQQVLKGKVSSPFGADPISDAYISIANEENTAQT
DEQGEFSITLNQLEGDLTVWAPGFQEQVIPLLGRDYLEIVLIPQRNDYYEVPVKSDAQGS
MKGQLLPAERFKPSAMYVEDVLQGAFPGLNVINKSGMPGEGATVNLRGIRSLTGKNAPLI
IINGMPYLPDLNNSAIIQGYSPSMFNVLSVDDIDNIKLVTGSAASRYGSMGSNGVLLIET
SSPKDMETVIEFSGQYGMAYNNKRLPVLGVDDFKSYIGDVGLTRYEDMGDMLDLFPFLRD
DPDYYYNFLYNNQTDWQELVNKSAFVTSNHLRVKGGDAIAKYDLSVGASNQGGTYDNTNF
TRYTTRLNAQIELSERFQLVTSMGLTYGNSKLHEQILNDATNPLMAALYKAPILSPFKKD
EYNNQLPAYDAVRQFGVSNPLAVVNDTKMESDNFDAFLNTGLNFEVNDHTKMQAVFGYYS
GYKRQSAFIPGRSDQTITPQEEGVALNTARAGTGKVSNLFYKVSADIVEELAGNPLEAGI
GYQGIMTRHEFDGGFGRNTSSDFYKTLSYVDAEGRYFSGYYNSWNWMSLYGYAKYTMGNQ
WVASLNMSADGASSTGADASRFGVYPGLEMTWQAKHSPWLKHSHVVNQLDLHVGYGLTGN
SQFPTGLSRQFYTSQAYRQLAGIVNGNVANTNLGRERNQNFDAGIDAGFFDRRLVASLSV
YQTISSDVIFPQGISSVYGIDQQYVNGAKLENKGIEAALQLRLVDQRDVSWSIGGTINKN
QNKITSMEGGAASIIREMDGGKWAVSSAVDQNPYNFYGFVSNGVISTQEEADALGLVDYK
GDQFNAGDIHFEDLNQDGIIDDQDRTIIGDASPDFFGSFFTQVRYKKLSLSAQFTFSAGN
QIYNGVRREMESLSDFRNQSMAVDKRWQTDGQQTDIPKANYGDPMGNSRFSDRWIEDGSF
LRLNNVTLSYQLGKWSFIEGGEVYLAGENLLTFTDYLGLDPVVSYAYQPAWQGVDYGAMP
LPSTVKFGFNLQF