Protein Info for Echvi_3391 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1083 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 30 to 1083 (1054 residues), 734.1 bits, see alignment E=3.4e-224 PF13715: CarbopepD_reg_2" amino acids 30 to 110 (81 residues), 55.4 bits, see alignment 7.8e-19 PF13620: CarboxypepD_reg" amino acids 30 to 104 (75 residues), 47.9 bits, see alignment 2.2e-16 PF07715: Plug" amino acids 130 to 253 (124 residues), 65.5 bits, see alignment E=8.9e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 229 to 259 (31 residues), 50.7 bits, see alignment (E = 1.1e-17)

Best Hits

KEGG orthology group: None (inferred from 50% identity to bth:BT_4164)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G3P8 at UniProt or InterPro

Protein Sequence (1083 amino acids)

>Echvi_3391 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKTTYIISCLLMLFTVLPLRAQEQQTQTVLTGKITDTGGEPLIGASIFIENEQQRNLNGT
ISDENGNYRLAVPQGNNLKVVFSYIGFKTKKVTIGNQTTINTTLDEDAFEYGSAEVVAER
VQTNSLGISQREQVSSSQRFDVEQLEEVPMTSIESGLQGRMANVDIISGADPGSRSTIRI
RGTSSLNANSDPLIVVDGIPYPTNFGDDFNFATANDQDFGALVNISPNDIESIEVLKDAA
ATAIWGSQGANGVLVFKTKKGKKGKTKFSFSTKSEIKKEPNTIPMLDGSQYVSLMQDGIW
NSINDVGYQSGSAYTDLLFQTPEINFDPEWVYFDEYNQNTNWVNEVTQLGYFLDNNFSLS
GGGDKAIYRVSVGYLRDVGTTIGTSLDRFNSMASVTYNFSNKLSVSADMSYSQSLKEANW
TESRFPSARSMAMRKMPNMSPYVLDANGNRTSEYFSPLENFQGSFANNKYYNPVALVRES
SNQTQADNARVIFRLRYQFNPDLQYQGTVGFDTRTNKNTSFLPQSVTGVLWTDPYFNRSS
DMLSDQLYINTENKLIYNKTIDDKNHIILSGLVQTNEGRNFGYVSQTSGNASVSLSDPTD
GAAVSKMESDNSMTRRIATIANAHYTFNGKYIISGGYRWEANSSLGASNRWAGFPSIGLA
WHFGDEPFMKDFAGIELGKLRASWGKSGNPPGGAFPYIGTFSPITPGYMDMVAISPSSIQ
LENLRWETITQSNIGIDFSLLEGRLYVTAEVYDRRTTDLLQKDYRLPSSTGFSEVRYYNS
GEVYNRGWEMIFNYDAIKREDLGISFNFNIARNRNKVEELPDNMLFENYEFDNGEYAHKI
VEGNPIGSFYGYRYEGVYQNGEETYARDNDGNLMYDIDGELVYMQNGNRRVYPGDAKYED
VNGDGVIDQFDIVYLGNAMPLFTAGAGFNIRWKNFMLTTFFHGRFGQKIVNQTRINTENM
YGTANQSTAVLQRWRHQGDDTDIPRALYNEGYNYLGSDRFVEDGSFVRLKTVSLRYSLPK
AWLSSNKIDRFDVFFTAQDLHTWTNYSGQDPEVNLSSNIYMLSVDGASTPRPKRFALGVN
MNF