Protein Info for Echvi_3340 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Transcriptional regulators

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 PF22381: Staph_reg_Sar_Rot" amino acids 32 to 111 (80 residues), 80.3 bits, see alignment E=3.1e-26 PF12802: MarR_2" amino acids 41 to 98 (58 residues), 37.2 bits, see alignment E=9.6e-13 PF01047: MarR" amino acids 42 to 100 (59 residues), 55.8 bits, see alignment E=1.2e-18 PF13463: HTH_27" amino acids 42 to 108 (67 residues), 36.6 bits, see alignment E=1.5e-12 PF01638: HxlR" amino acids 48 to 114 (67 residues), 25.3 bits, see alignment E=3.9e-09 PF03965: Penicillinase_R" amino acids 49 to 115 (67 residues), 27.6 bits, see alignment E=1.2e-09

Best Hits

KEGG orthology group: None (inferred from 55% identity to gfo:GFO_1928)

Predicted SEED Role

"Organic hydroperoxide resistance transcriptional regulator" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2P3 at UniProt or InterPro

Protein Sequence (149 amino acids)

>Echvi_3340 Transcriptional regulators (Echinicola vietnamensis KMM 6221, DSM 17526)
MIMTKNEDYETLRLENQLCFPLYAASRLMIKAYQPHLSKLDLTYPQYLVLLVLWENDHLT
VSQISHALMLESNTLTPLLKRLEEKNILKRERDREDERKVFVSLTEKGQTMREKAVCIPT
EIMKNVDILNLDEMKALYAHLGKLIHHLK