Protein Info for Echvi_3232 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: RteC protein.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 PF09357: RteC" amino acids 90 to 303 (214 residues), 272 bits, see alignment E=2.1e-85

Best Hits

KEGG orthology group: None (inferred from 71% identity to shg:Sph21_3609)

Predicted SEED Role

"Tetracycline resistance element mobilization regulatory protein rteC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2C0 at UniProt or InterPro

Protein Sequence (305 amino acids)

>Echvi_3232 RteC protein. (Echinicola vietnamensis KMM 6221, DSM 17526)
MLRQEGIKRFIYPEKHIFQDNFIIKHNYVMEKFFNQRLLELESGIKELEIEPDFSIQRIE
AGIELIVRCLATVKEHVLTKGFKDTNEEIQFFKHRKPIIVSKLIFYNSIYRIETKKPYGC
KATKKYLNRELRKLKRYFDENLEFYKYYRTNNTYLDEILFVRGKHDYKLCLEPYYIQSDH
NFSSSHDYKVAEIIANDLIQVYIEDQLYNSRYLDKRMAKNPNLNWTSSKTALIELIYAMH
AQGVFDHGNADIKVITKKIEKMFNVGLGDFYHTYLELRGRKINRTKFIDTLRESLVKKMD
EQDEK