Protein Info for Echvi_3206 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Amino acid transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 82 to 105 (24 residues), see Phobius details amino acids 125 to 143 (19 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 228 to 250 (23 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details amino acids 330 to 345 (16 residues), see Phobius details amino acids 351 to 370 (20 residues), see Phobius details amino acids 382 to 401 (20 residues), see Phobius details amino acids 407 to 428 (22 residues), see Phobius details PF13520: AA_permease_2" amino acids 10 to 399 (390 residues), 94.7 bits, see alignment E=6.4e-31 PF00324: AA_permease" amino acids 19 to 404 (386 residues), 39.8 bits, see alignment E=2.5e-14

Best Hits

KEGG orthology group: None (inferred from 84% identity to mtt:Ftrac_1539)

Predicted SEED Role

"Amino acid transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G3L5 at UniProt or InterPro

Protein Sequence (437 amino acids)

>Echvi_3206 Amino acid transporters (Echinicola vietnamensis KMM 6221, DSM 17526)
MEESYKKGSLSLLGSIALGTGVMIGAGIFALLGQVAELSGTWFPYIFVLGALISAFSAYS
YIKVSNTYPSAGGIAMILKKAYGKSTITASASLLMALSMVINESLVARTFGSYTLQLFEV
ENKELWIPILGVALLVSAFLINISGNKLIGKSSQFMSFIKIIGILIFAIGALWAVGFSLE
GLIPKAIKNTDYSATSYIGALALSILAYKGFTTITNSGGEITEPQKNVGLSIIISLLICT
VVYFLVAFAVNSSLTISEIIQAKDYSLAEAARPAFGDFGLHFTVAIAIIATISGVIASIF
AVSRMTAMLTDMELIPHSHLGMSGRIQKHMLVYVVFIAIILTIFFDLSRIASIGAIFYMV
MDIIIHWGVYKYLRKEVKANGTIVLTAMVLDFIVLAAFLWIKASSDLLVLIVSASVMLIV
FAGEKWFLSRADKSTQK