Protein Info for Echvi_3176 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Bacteroides conjugative transposon TraM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 40 to 57 (18 residues), see Phobius details TIGR03779: Bacteroides conjugative transposon TraM protein" amino acids 33 to 443 (411 residues), 426.6 bits, see alignment E=6.4e-132 PF12508: Transposon_TraM" amino acids 291 to 440 (150 residues), 152.7 bits, see alignment E=5.3e-49

Best Hits

KEGG orthology group: None (inferred from 74% identity to lby:Lbys_0161)

Predicted SEED Role

"Conjugative transposon protein TraM" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G264 at UniProt or InterPro

Protein Sequence (443 amino acids)

>Echvi_3176 Bacteroides conjugative transposon TraM protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MKENENQRTVVRVTEGDPGTTKDMLQDSTQNKTEKFKKPLIFVLMGVVFLGCMYLIFKPS
SDKKEVENVGINDAVPQATGAGLPADKGKAYEQEMMERKEQEKRNAMATLSDYWNTNDQE
KPMEEFPEEDENYSYTGGRSAGRSGNPALSSYRYAQNTLESFYQEDDTETAELRRQLDEL
KEQLAEKEVPPAVTVDDQLALMEKSYQMAAKYLPSGTNAGQAVSADGVAKVAAPTQKVHF
VAFTPTRKNTVSALYREPADSTFLADWSESRNRGFFTTGSVGQVVQSKNSIKACVHETQT
ITGESGVRLRLLESAQTPDRTIPKGTVLTANAKFQGGRLQLNVSSIELEGNIMPVDIAIY
DLDGQQGLHVPYSPEMNALTEMAGNMSQTSGTSLMLTQSAGQQMAADLSRGVVQGISGYF
SKKVRTPKVTLKAGHQLFLVPKQ