Protein Info for Echvi_3171 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 141 to 163 (23 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details amino acids 225 to 251 (27 residues), see Phobius details amino acids 264 to 284 (21 residues), see Phobius details amino acids 296 to 313 (18 residues), see Phobius details amino acids 319 to 343 (25 residues), see Phobius details amino acids 355 to 374 (20 residues), see Phobius details amino acids 380 to 400 (21 residues), see Phobius details PF07690: MFS_1" amino acids 13 to 285 (273 residues), 147 bits, see alignment E=7.1e-47 amino acids 232 to 404 (173 residues), 70.6 bits, see alignment E=1.2e-23 PF00083: Sugar_tr" amino acids 48 to 179 (132 residues), 53.3 bits, see alignment E=2.3e-18

Best Hits

KEGG orthology group: K08153, MFS transporter, DHA1 family, multidrug resistance protein (inferred from 86% identity to zpr:ZPR_3415)

Predicted SEED Role

"Multidrug-efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G258 at UniProt or InterPro

Protein Sequence (405 amino acids)

>Echvi_3171 Arabinose efflux permease (Echinicola vietnamensis KMM 6221, DSM 17526)
MNQKEKLNSISLILLSLFVVMLGYGILLPTLPYYTERLALKDNLDTDLINFHIGLLTSIY
PLFQLIFVVVWGKLSDRYGRKPVIIIGLIGFVIMQLLTGLATSLTMLYIARIFGGVFTSS
VIPVSNAYLSDITSEKRRTKIMAWSGVAISSGVIFGPVIGGFLSQSDLHFEYAIGQLHLG
RFSTPFLFAALLGFIVLVIVVKCLKNSVRIHKFTTQKFTFRFSFSQYFLVLLALSFVIQF
VVTLFETVFSIYGKDELGFNSNQVGIGFILCGSIMAVLQPVFASYGEKILSTKKQIGFGL
FISGISLIAFPFFKNEFVVYGLIVVFAAGGAMVTPNLLSAVSLLSKTNTGRNISIQSSTN
SVGQILGPVLGTWLVTGGFYYPFLIAGSIILVAIGFLIFLKKPPI