Protein Info for Echvi_3163 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 PF03477: ATP-cone" amino acids 7 to 70 (64 residues), 30.9 bits, see alignment E=3.3e-11

Best Hits

KEGG orthology group: None (inferred from 81% identity to zpr:ZPR_3407)

Predicted SEED Role

"A. fulgidus predicted coding region AF1548"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G3G6 at UniProt or InterPro

Protein Sequence (281 amino acids)

>Echvi_3163 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains (Echinicola vietnamensis KMM 6221, DSM 17526)
MNKSVLIKKYSGDVVEFDVDKLINSLKRSQASDTVVQQIVEQVEGQLYDGITTKKIYQMA
FKILKSKSRVSASKYKLKKAIMELGPSGFPFEKFVGKILEMEGFSTNVGVIVQGNCVQHE
VDVIAEKENKHYMIECKYHSDQGRFCNVKIPLYIHSRFLDVEKQWEHQKGHEAKLHKGGV
YTNTRFTTDAIQYGKCVGMLMSSWDYPRGNGLKDRIDNSGLHPLTALTTLTKAEKTKLLD
EGIVLCKELHESPKLLEKIGIDKKRHKKILEDSEKLCSVHQ