Protein Info for Echvi_3154 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 33 to 52 (20 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details amino acids 204 to 223 (20 residues), see Phobius details PF18916: Lycopene_cyc" amino acids 130 to 222 (93 residues), 65.5 bits, see alignment E=2.7e-22

Best Hits

KEGG orthology group: None (inferred from 98% identity to zpr:ZPR_3396)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G1G4 at UniProt or InterPro

Protein Sequence (236 amino acids)

>Echvi_3154 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MQYVWFIWSLIILALWAIIYLSKKGYRKEMLKMSLITMPFGLTEPLFVPEYWFPPSLFNL
AERTGFDIESLIFSFAIGGIGTVLYNLIFKKSYIDMPHTERGHQRHKLHIYILFVPAIVF
VIFSLFTTLNHIYCGIIAMFFGGLATLYCRPDLKGKIWVGGILFTILYFIYFGSILPFYP
QYVELYWNLDNLTHILVLRIPIEELLFAFTFGMYWSGLYEHLYWRKLIKSKEMSTN