Protein Info for Echvi_3123 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Endopolygalacturonase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00295: Glyco_hydro_28" amino acids 122 to 320 (199 residues), 79.4 bits, see alignment E=2.8e-26

Best Hits

KEGG orthology group: None (inferred from 65% identity to psn:Pedsa_3715)

Predicted SEED Role

"Exopolygalacturonase precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2Y4 at UniProt or InterPro

Protein Sequence (439 amino acids)

>Echvi_3123 Endopolygalacturonase (Echinicola vietnamensis KMM 6221, DSM 17526)
MKRYLFLLIVLLTSISPLMAQEEVFPDGSPIPDWFRQIEPTDIDQLGKHYRITDYGVVND
STVLQTEKIQAVIDQASEQGGGIIIIPAGTFLSGSLFFKPGTHLHLEKNAVIKGSDDITH
FKLLETRMEGQTLKYFAALVNADGMDGFTISGSGTLNGNGHRYWRHFWIRRQFNKNCTNM
DEMRPRVLYISNSKNVQVSGISLINSPFWTSHYYKCENVKILNLHIFAPHTTEKAPSSDA
IDLDACKNVLVKNCFMSVNDDAIALKGGKGPNADTDPNNGGNYNIIVEDCEFGFCHSALT
CGSESIHNRNIILRRIKVTDAKRLFLLKMRPDTPQHYEYITLEDIKGSAKNMFNFSPWTQ
FFDLKGEKDIKFSKGNHITFRNIKLDCDRIFNSRASDQYNVSNVTMEDVKLSTSPDQVTK
PEYIDNLIMKNVKINGDKL