Protein Info for Echvi_2897 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 24 to 1100 (1077 residues), 559.1 bits, see alignment E=2.6e-171 PF13620: CarboxypepD_reg" amino acids 24 to 95 (72 residues), 56.2 bits, see alignment 5.6e-19 PF13715: CarbopepD_reg_2" amino acids 25 to 106 (82 residues), 71.8 bits, see alignment 5.8e-24 PF07715: Plug" amino acids 117 to 240 (124 residues), 69.7 bits, see alignment E=4.5e-23 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 217 to 246 (30 residues), 50.5 bits, see alignment (E = 1.3e-17)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2C9 at UniProt or InterPro

Protein Sequence (1100 amino acids)

>Echvi_2897 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKHKLLLTTMLCLLLGFSAWAQSTVTGTITDDNGDPIPGASIRVVDTNLGTVTDLDGVYN
INVPAGKTTLTFSFVGFETQQIEVGGRSTIDVTLSPSVSDLQEVVVTGAMGIEKDPRKLG
YAVSTVDSKDILQSSPTNVASALYAKAPGVTISTNPGGATSAVAVQIRGLSSISYQQQPL
LVVDGVISRNGDTNNDGYWSSPRIKGNGILDINPENIESINILKGAAASALYGSDAAAGV
IVITTKDGGKSNGFGVDFNVSYGVEKVGVLPDVQNVFGPGYDRATNMSMGADENGWVERQ
VNGQTVQSPLFNSWGQFGPKMDGRDVYFWDGETRPYVAYEDNMKNFYRTGHSGIYNVAIS
NGSENSNYRLSYTRNDYRGVMEGGEQNKNTFNLNSKYQVAPKVNVDLVATYISEKVTNRP
WMVDRMSNNYSGFLNPATDIRWFEEKYQTSKGYKYIPANGNLYDPDEAFALVTAGTPYMD
YYWTQRARQFTENTNRLMGAMTVTYDILDNLTVRGRVGTDYTGYATENKEPNTVPLSVDN
SGLYGTSQDQYRIFYGDVLVSYNASLGNGYDLNLRAGYQAREENYRYTSQNTQGGLTEEN
WFSMNASRQNPRGYSTRSYLVKDGLFAMASLDVKDFLFIETSLRQERTSTLYFDNNKFVY
PSVSAAFELSKVATLPEFITYSKIRSSYGVVGNPAPAYQANVVYNAASIDGRPALYPLAQ
YGNNGLQNELKHEAEIGWENRFANNRFGLNLTYYQNTIKDMILPLQIPTSTGANTILSNV
GNMQNYGLEVGLSATPVQTADWVWDVQINTGFNRNKVTQLMPGLETLIHSRPDNGSLQIV
SQIGEPAGDIMGYTLMRNESGELLVGEDGYYIPDYDNLVKLGNVQPKAAGGFINNLGYKN
FNLNAVIDYKWGGQVYSPSIQYMRSAGMLEETLFGRSEEYGGLPYYVNGDGDFVSAEGMS
AGPNGESIYHDGMIMDGVNGEGEQNTTIVDAPNYYLNTYYWGSYPGSGLVGTYESAVFDN
NYIKLRELVVSYTIPKAVGKKFKVQNMTISAYGRNLFYIYKSLPHLDPEAAVGTNYLTRG
GIGNGGAASRSYGMSIRASF