Protein Info for Echvi_2855 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF12771: SusD-like_2" amino acids 35 to 456 (422 residues), 308.9 bits, see alignment E=5.7e-96 PF12741: SusD-like" amino acids 88 to 397 (310 residues), 141.9 bits, see alignment E=3.4e-45 amino acids 404 to 486 (83 residues), 85 bits, see alignment E=6.2e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYW3 at UniProt or InterPro

Protein Sequence (489 amino acids)

>Echvi_2855 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKSLTKIYALFMIPAVGLFLDSCTGDFEEMNVDPNNPTSISPALLLPNAIQVSVDRYWG
HSSRFQRLNIDAAMCWMQHLARNIYINVEGDSYEIPLTVSSGTWDALYNDALVNFESVQR
LSGEGGEFENTNYYGVALVMKAFTFSYMTDVFGPIPYSEALKGTAENPINSPKYDSMEDI
YAGLMEDLRLANESLSTDGPAISGDILFEGDIMRWKKFANSLRLKLANHQAGQKPAASQA
IMAEILGDPSTYPLFTSNDDFAQLNHVDVIGSRNKMFDVFSTRSDWNISETLINKLLELD
DGRITVYAQPLADGSYAGLPNGLTDAAAGNYSASIIGTKFLDPTAPSILMSYAELLFIEA
EAALDGDIDGDPAALLEEAIAASFDQHGLEMPADYMSRIGEVDKETIMTQKWLALFGQGV
EAWTEYRRTGYPVFPPPNPDAVFYNEGVLPTRLEYPTSEYSLNKAALDEGLRLLGGDDTM
RSPLWWVED