Protein Info for Echvi_2811 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ABC-type sugar transport system, periplasmic component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 913 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 339 to 358 (20 residues), see Phobius details PF13407: Peripla_BP_4" amino acids 29 to 283 (255 residues), 144.3 bits, see alignment E=1.8e-45 PF00532: Peripla_BP_1" amino acids 62 to 230 (169 residues), 43.4 bits, see alignment E=1.1e-14 PF00512: HisKA" amino acids 400 to 462 (63 residues), 45.8 bits, see alignment 1.8e-15 PF02518: HATPase_c" amino acids 510 to 618 (109 residues), 88 bits, see alignment E=2e-28 PF00072: Response_reg" amino acids 665 to 775 (111 residues), 73.5 bits, see alignment E=5.3e-24 PF12833: HTH_18" amino acids 830 to 908 (79 residues), 85.2 bits, see alignment E=1.1e-27 PF00165: HTH_AraC" amino acids 874 to 907 (34 residues), 35.2 bits, see alignment (E = 3.7e-12)

Best Hits

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2J4 at UniProt or InterPro

Protein Sequence (913 amino acids)

>Echvi_2811 ABC-type sugar transport system, periplasmic component (Echinicola vietnamensis KMM 6221, DSM 17526)
MKIQLLVVLLYVAAFFSCNPEKDHATYKIGFSQCVSGDAWRRAMHQEMYRELSFYPELSL
EIKDAKGDNTTQIRQIRDFLDEGIDLLIVSPNESEPITPIVEEAFQNGIPVIVIDRKISS
NLYTAYVGGDNYDVGHTAGQYIRNLLKGQGRVLEIWGLQGSSPAKERHRGLLKGFQDSEI
EIVTSIKGEWEKDTAKNRLKQHLQSGTIPEFDLVFGHNDVMAIGAHEICKNLDIVQKKFI
GVDALPGPYGGIQAVTDGILDATFLYPTGGDIAIEIAHKILSDEQVVKENILQTAVVDST
NIRIMKQQTDKIIDQQDNITRQKQRIDVQMEIYKNQRTFLFGFGLTLFVAIISLAYVFKS
LREKQEINEELKNKNDEILQQKDKVLSLSKKAEEATQQKFDFFTNISHEFRTPLTLIQAP
VEDLLANKDAAPFKPDLQLIRKNTMRLLRLVNQLMDLRKIDHAKMKVKAVEQELIPFLQD
ILNSFDKTAQKHDITLRLLADNRNLKVWYDPMMLDKVMFNLLSNAFKFTPIHGSVIVKVT
EKPLSNKVCIRVEDTGSGMSPEDTSHVFDRFYQGETYSAAGSGIGLALSKELIELHHGEI
CLESTLGKGTSFEVVLQMGKAHFNESEMLNGTATQYFSEENIGILEEVTPKISRDTQEEK
EQTLLIIEDDQQIRQYLCQQLSAHYNILEAENFEVGIAKALDKLPDLITCDLMLKQGSGF
DIIKKLKDDIRTSHIPIIVITAKSSLDERIEGIKLGVDDYISKPFSFTLLLERIKTLLAN
RQKLREHYLHELPIEKSKSSGISTDKKFINAFNAIIEQHLSDPQFGVNTICDEIGLSRGQ
LYRKVKSMLGYSVNDYINRVRMKKAKRLLAENDTPIADIAFQVGFSTSAYFSTAFKNYFG
STPSEFRDQCKNS