Protein Info for Echvi_2657 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1138 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 128 to 1138 (1011 residues), 799.3 bits, see alignment E=7.1e-244 PF13620: CarboxypepD_reg" amino acids 130 to 199 (70 residues), 36.3 bits, see alignment 9.4e-13 PF13715: CarbopepD_reg_2" amino acids 130 to 211 (82 residues), 69 bits, see alignment 4.3e-23 PF07715: Plug" amino acids 219 to 327 (109 residues), 61 bits, see alignment E=2.3e-20 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 304 to 333 (30 residues), 60.6 bits, see alignment (E = 9.6e-21)

Best Hits

KEGG orthology group: None (inferred from 56% identity to zpr:ZPR_0748)

Predicted SEED Role

"FIG01289191: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G013 at UniProt or InterPro

Protein Sequence (1138 amino acids)

>Echvi_2657 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MLSRYFVGAFIFQLFFTAVLMANTGNAQFKRLDEVKVTIQVEATGLAQIITELEEQTGFQ
FSYNKAKISFRDIQLDIDQKGAALADVLREISQETSLKFVRVDNTIHITKKKSGDISVKE
TPSTAEVIKVTGKVVSDTDGMPIPGVTVRIEGTTRGTVTNIDGAYTIDVNEGETLVFSFV
GFVEKKVVVGSQSTIDISLAEDLQSLDEVVVVGYAEQKKETIVGAVTQTDGEVLKRTGGV
SNVGQALTGNLPGVITTSSVGTPGEEMPQIVIRGQNSWNGNSPLILVDGVERPEFFANMD
INSVESISVLKDASATAVFGSRGANGVIIVTTKRGREGKAEITANISTTMKSVSKLPGKL
DSYDAIGVRNWAIERELSLSPNSWDEMIPQAMREKYRFPANLEEMERYPNVDWQDVVFKD
QAMAYNANVGVRGGTDFVKYFTSIDYQYEGDLFRKFETGRGYQAGFNFNRINFRSNLDFQ
LTPTTKLGVNLGGTYGVRQSPWAYNFPESYWNSAYRSPPDVFLPRYSDGAYGTYSPDDYA
VTNSLLNLAISGINYITTTRLSTNFSLEQDLGMIIKGLNFRGTLAVDNSFQETNRGVNDD
NNSPNTKWINPFTGEEDFTNILNPNTRFDYVEAITWQDQAGSVDNNASQRRLFYQLQLNY
AKSIEGNHNFSLMGLLNRQEDARGSVIPSYREDWVFRTTYDYKNKYLIEYNGAYNGSEKF
SPENRFAFFSSGGIGWNITEENFMKNMSFVDRLKLRASYGEVGDDNIGGRFLFMDQWVYG
STSQMGVIGQAGEDSPYTWYRQNAVGNPNVHWETVYKYNAGVEFGFMNGLINGSVDWFRD
NRVDILMGSGRSVPSYYGATAPAANLGRVETEGYELTIGLNHTFDSGIRLWGDFSMTHAI
DQVIDRDDPELRPDYQKNAGYQLGQYRSHISAGYYNTWDELYGSPQHNTNDMAKLPGNYY
IVDFNGDGVVDAFDSAPYGFSGVPQNTYSTNLGIEWKGLSLYVQFYGVNNVTRDVSLSSL
GGGLNLVYDEGTYWSKENTSADSPLPRWRSQPASYNYGPRYLYDGSYLRLKNAEIAYNFQ
SDWVRSMGMSNMRLYINGNNLLLWTDMPDDRESNFGGPSWQGAYPTVRRINLGLNVTF